Calcium in PDB 8rcf: RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna (pdb code 8rcf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna, PDB code: 8rcf:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:75.8 occ:1.00 OG1 A:THR134 2.1 79.3 1.0 O2G A:ATP403 2.1 86.0 1.0 O2B A:ATP403 2.3 86.0 1.0 OE1 A:GLU163 3.2 85.9 1.0 PG A:ATP403 3.4 86.0 1.0 CB A:THR134 3.4 79.3 1.0 PB A:ATP403 3.5 86.0 1.0 O3B A:ATP403 3.6 86.0 1.0 OG1 A:THR165 3.8 85.6 1.0 CG2 A:THR134 3.9 79.3 1.0 O1A A:ATP403 4.0 86.0 1.0 O1G A:ATP403 4.1 86.0 1.0 OD2 A:ASP222 4.1 84.0 1.0 O3A A:ATP403 4.3 86.0 1.0 CD A:GLU163 4.3 85.9 1.0 CB A:THR165 4.4 85.6 1.0 OD1 A:ASP222 4.4 84.0 1.0 PA A:ATP403 4.5 86.0 1.0 CA A:THR134 4.5 79.3 1.0 O3G A:ATP403 4.5 86.0 1.0 CG2 A:THR165 4.5 85.6 1.0 N A:THR134 4.6 79.3 1.0 OE2 A:GLU163 4.6 85.9 1.0 O2A A:ATP403 4.6 86.0 1.0 O1B A:ATP403 4.7 86.0 1.0 CG A:ASP222 4.7 84.0 1.0

Calcium binding site 2 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:50.5 occ:1.00 O3G A:ATP403 2.2 86.0 1.0 PG A:ATP403 3.7 86.0 1.0 O2G A:ATP403 4.1 86.0 1.0 O3B A:ATP403 4.5 86.0 1.0 CB A:PHE129 4.5 75.6 1.0 O1G A:ATP403 4.6 86.0 1.0 CD2 A:PHE129 4.9 75.6 1.0

Calcium binding site 3 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca404 b:50.5 occ:1.00 O3G B:ATP402 2.2 86.0 1.0 O A:ALA293 2.3 63.7 1.0 O A:SER296 2.3 66.4 1.0 OD2 A:ASP316 2.7 79.1 1.0 O A:HIS294 3.0 67.1 1.0 C A:SER296 3.4 66.4 1.0 C A:ALA293 3.4 63.7 1.0 C A:HIS294 3.6 67.1 1.0 PG B:ATP402 3.7 86.0 1.0 CA A:HIS294 3.7 67.1 1.0 CG A:ASP316 3.7 79.1 1.0 N A:HIS294 4.0 67.1 1.0 N A:SER296 4.1 66.4 1.0 O2G B:ATP402 4.1 86.0 1.0 CA A:SER296 4.2 66.4 1.0 N A:THR297 4.4 74.0 1.0 CB A:SER296 4.4 66.4 1.0 O3B B:ATP402 4.5 86.0 1.0 OD1 A:ASP316 4.5 79.1 1.0 CB B:PHE129 4.5 75.6 1.0 O A:THR297 4.5 74.0 1.0 CA A:THR297 4.6 74.0 1.0 N A:ALA295 4.6 65.1 1.0 CA A:ALA293 4.6 63.7 1.0 C A:ALA295 4.6 65.1 1.0 CB A:ASP316 4.6 79.1 1.0 O1G B:ATP402 4.6 86.0 1.0 C A:THR297 4.7 74.0 1.0 CD A:ARG299 4.7 72.0 1.0 CG A:ARG299 4.9 72.0 1.0 CD2 B:PHE129 4.9 75.6 1.0

Calcium binding site 4 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:75.8 occ:1.00 OG1 B:THR134 2.1 79.3 1.0 O2G B:ATP402 2.1 86.0 1.0 O2B B:ATP402 2.3 86.0 1.0 OE1 B:GLU163 3.2 85.9 1.0 PG B:ATP402 3.4 86.0 1.0 CB B:THR134 3.4 79.3 1.0 PB B:ATP402 3.5 86.0 1.0 O3B B:ATP402 3.6 86.0 1.0 OG1 B:THR165 3.8 85.6 1.0 CG2 B:THR134 3.9 79.3 1.0 O1A B:ATP402 4.0 86.0 1.0 O1G B:ATP402 4.1 86.0 1.0 OD2 B:ASP222 4.1 84.0 1.0 O3A B:ATP402 4.3 86.0 1.0 CD B:GLU163 4.3 85.9 1.0 CB B:THR165 4.4 85.6 1.0 OD1 B:ASP222 4.4 84.0 1.0 PA B:ATP402 4.5 86.0 1.0 CA B:THR134 4.5 79.3 1.0 O3G B:ATP402 4.5 86.0 1.0 CG2 B:THR165 4.5 85.6 1.0 N B:THR134 4.6 79.3 1.0 OE2 B:GLU163 4.6 85.9 1.0 O2A B:ATP402 4.6 86.0 1.0 O1B B:ATP402 4.7 86.0 1.0 CG B:ASP222 4.7 84.0 1.0

Calcium binding site 5 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca403 b:50.5 occ:1.00 O B:SER296 2.2 66.4 1.0 O3G C:ATP402 2.2 86.0 1.0 O B:ALA293 2.3 63.7 1.0 OD2 B:ASP316 2.8 79.1 1.0 O B:HIS294 3.0 67.1 1.0 C B:SER296 3.4 66.4 1.0 C B:ALA293 3.4 63.7 1.0 C B:HIS294 3.5 67.1 1.0 PG C:ATP402 3.7 86.0 1.0 CA B:HIS294 3.7 67.1 1.0 CG B:ASP316 3.8 79.1 1.0 N B:SER296 4.0 66.4 1.0 N B:HIS294 4.0 67.1 1.0 O2G C:ATP402 4.1 86.0 1.0 CA B:SER296 4.1 66.4 1.0 N B:THR297 4.3 74.0 1.0 CB B:SER296 4.4 66.4 1.0 O3B C:ATP402 4.5 86.0 1.0 O B:THR297 4.5 74.0 1.0 CB C:PHE129 4.5 75.6 1.0 OD1 B:ASP316 4.5 79.1 1.0 CA B:THR297 4.5 74.0 1.0 C B:ALA295 4.6 65.1 1.0 N B:ALA295 4.6 65.1 1.0 CA B:ALA293 4.6 63.7 1.0 C B:THR297 4.6 74.0 1.0 O1G C:ATP402 4.6 86.0 1.0 CB B:ASP316 4.7 79.1 1.0 CD B:ARG299 4.8 72.0 1.0 CG B:ARG299 4.9 72.0 1.0 CD2 C:PHE129 4.9 75.6 1.0

Calcium binding site 6 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca401 b:75.8 occ:1.00 OG1 C:THR134 2.1 79.3 1.0 O2G C:ATP402 2.1 86.0 1.0 O2B C:ATP402 2.3 86.0 1.0 OE1 C:GLU163 3.2 85.9 1.0 PG C:ATP402 3.4 86.0 1.0 CB C:THR134 3.4 79.3 1.0 PB C:ATP402 3.5 86.0 1.0 O3B C:ATP402 3.6 86.0 1.0 OG1 C:THR165 3.8 85.6 1.0 CG2 C:THR134 3.9 79.3 1.0 O1A C:ATP402 4.0 86.0 1.0 O1G C:ATP402 4.1 86.0 1.0 OD2 C:ASP222 4.1 84.0 1.0 O3A C:ATP402 4.3 86.0 1.0 CD C:GLU163 4.3 85.9 1.0 CB C:THR165 4.4 85.6 1.0 OD1 C:ASP222 4.4 84.0 1.0 PA C:ATP402 4.5 86.0 1.0 CA C:THR134 4.5 79.3 1.0 O3G C:ATP402 4.5 86.0 1.0 CG2 C:THR165 4.5 85.6 1.0 N C:THR134 4.6 79.3 1.0 OE2 C:GLU163 4.6 85.9 1.0 O2A C:ATP402 4.6 86.0 1.0 O1B C:ATP402 4.7 86.0 1.0 CG C:ASP222 4.7 84.0 1.0

Calcium binding site 7 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca403 b:50.5 occ:1.00 O3G D:ATP402 2.2 86.0 1.0 O C:SER296 2.2 66.4 1.0 O C:ALA293 2.3 63.7 1.0 OD2 C:ASP316 2.7 79.1 1.0 O C:HIS294 3.0 67.1 1.0 C C:SER296 3.4 66.4 1.0 C C:ALA293 3.4 63.7 1.0 C C:HIS294 3.6 67.1 1.0 PG D:ATP402 3.7 86.0 1.0 CA C:HIS294 3.7 67.1 1.0 CG C:ASP316 3.8 79.1 1.0 N C:SER296 4.0 66.4 1.0 N C:HIS294 4.1 67.1 1.0 O2G D:ATP402 4.1 86.0 1.0 CA C:SER296 4.1 66.4 1.0 N C:THR297 4.4 74.0 1.0 CB C:SER296 4.4 66.4 1.0 O C:THR297 4.5 74.0 1.0 O3B D:ATP402 4.5 86.0 1.0 OD1 C:ASP316 4.5 79.1 1.0 CB D:PHE129 4.5 75.6 1.0 CA C:THR297 4.5 74.0 1.0 C C:ALA295 4.6 65.1 1.0 N C:ALA295 4.6 65.1 1.0 CB C:ASP316 4.6 79.1 1.0 CA C:ALA293 4.6 63.7 1.0 C C:THR297 4.6 74.0 1.0 O1G D:ATP402 4.6 86.0 1.0 CD C:ARG299 4.7 72.0 1.0 CG C:ARG299 4.9 72.0 1.0 CD2 D:PHE129 4.9 75.6 1.0

Calcium binding site 8 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca401 b:75.8 occ:1.00 OG1 D:THR134 2.1 79.3 1.0 O2G D:ATP402 2.1 86.0 1.0 O2B D:ATP402 2.3 86.0 1.0 OE1 D:GLU163 3.2 85.9 1.0 PG D:ATP402 3.4 86.0 1.0 CB D:THR134 3.4 79.3 1.0 PB D:ATP402 3.5 86.0 1.0 O3B D:ATP402 3.6 86.0 1.0 OG1 D:THR165 3.8 85.6 1.0 CG2 D:THR134 3.9 79.3 1.0 O1A D:ATP402 4.0 86.0 1.0 O1G D:ATP402 4.1 86.0 1.0 OD2 D:ASP222 4.1 84.0 1.0 O3A D:ATP402 4.3 86.0 1.0 CD D:GLU163 4.3 85.9 1.0 CB D:THR165 4.4 85.6 1.0 OD1 D:ASP222 4.4 84.0 1.0 PA D:ATP402 4.5 86.0 1.0 CA D:THR134 4.5 79.3 1.0 O3G D:ATP402 4.5 86.0 1.0 CG2 D:THR165 4.5 85.6 1.0 N D:THR134 4.6 79.3 1.0 OE2 D:GLU163 4.6 85.9 1.0 O2A D:ATP402 4.6 86.0 1.0 O1B D:ATP402 4.7 86.0 1.0 CG D:ASP222 4.7 84.0 1.0

Calcium binding site 9 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca403 b:50.5 occ:1.00 O D:SER296 2.2 66.4 1.0 O3G E:ATP402 2.2 86.0 1.0 O D:ALA293 2.3 63.7 1.0 OD2 D:ASP316 2.7 79.1 1.0 O D:HIS294 3.0 67.1 1.0 C D:SER296 3.3 66.4 1.0 C D:ALA293 3.5 63.7 1.0 C D:HIS294 3.6 67.1 1.0 PG E:ATP402 3.7 86.0 1.0 CA D:HIS294 3.7 67.1 1.0 CG D:ASP316 3.8 79.1 1.0 N D:SER296 4.0 66.4 1.0 N D:HIS294 4.1 67.1 1.0 O2G E:ATP402 4.1 86.0 1.0 CA D:SER296 4.1 66.4 1.0 N D:THR297 4.3 74.0 1.0 CB D:SER296 4.4 66.4 1.0 O D:THR297 4.4 74.0 1.0 O3B E:ATP402 4.5 86.0 1.0 CB E:PHE129 4.5 75.6 1.0 OD1 D:ASP316 4.5 79.1 1.0 CA D:THR297 4.5 74.0 1.0 C D:ALA295 4.6 65.1 1.0 N D:ALA295 4.6 65.1 1.0 C D:THR297 4.6 74.0 1.0 O1G E:ATP402 4.6 86.0 1.0 CB D:ASP316 4.6 79.1 1.0 CA D:ALA293 4.6 63.7 1.0 CD D:ARG299 4.8 72.0 1.0 CG D:ARG299 4.9 72.0 1.0 CD2 E:PHE129 4.9 75.6 1.0

Calcium binding site 10 out of 16 in the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca401 b:75.8 occ:1.00 OG1 E:THR134 2.1 79.3 1.0 O2G E:ATP402 2.1 86.0 1.0 O2B E:ATP402 2.3 86.0 1.0 OE1 E:GLU163 3.2 85.9 1.0 PG E:ATP402 3.4 86.0 1.0 CB E:THR134 3.4 79.3 1.0 PB E:ATP402 3.5 86.0 1.0 O3B E:ATP402 3.6 86.0 1.0 OG1 E:THR165 3.8 85.6 1.0 CG2 E:THR134 3.9 79.3 1.0 O1A E:ATP402 4.0 86.0 1.0 O1G E:ATP402 4.1 86.0 1.0 OD2 E:ASP222 4.1 84.0 1.0 O3A E:ATP402 4.3 86.0 1.0 CD E:GLU163 4.3 85.9 1.0 CB E:THR165 4.4 85.6 1.0 OD1 E:ASP222 4.4 84.0 1.0 PA E:ATP402 4.5 86.0 1.0 CA E:THR134 4.5 79.3 1.0 O3G E:ATP402 4.5 86.0 1.0 CG2 E:THR165 4.5 85.6 1.0 N E:THR134 4.6 79.3 1.0 OE2 E:GLU163 4.6 85.9 1.0 O2A E:ATP402 4.6 86.0 1.0 O1B E:ATP402 4.7 86.0 1.0 CG E:ASP222 4.7 84.0 1.0

R.Appleby, L.Pellegrini. Cryoem Structure of the RAD51 Nucleoprotein Filament on Double-Stranded Abasic Dna To Be Published.