Calcium in PDB 8sjb: Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
Protein crystallography data
The structure of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C, PDB code: 8sjb
was solved by
Y.R.Perera,
A.M.Rodriguez,
V.Garcia,
R.M.Guillen,
W.J.Chazin,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
62.42 /
1.74
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.436,
76.935,
106.793,
90,
90,
90
|
R / Rfree (%)
|
18.4 /
19.7
|
Other elements in 8sjb:
The structure of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
(pdb code 8sjb). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Crystal Structure of ZN2+ Bound Calprotectin Variant H87C, PDB code: 8sjb:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 8sjb
Go back to
Calcium Binding Sites List in 8sjb
Calcium binding site 1 out
of 8 in the Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca101
b:29.7
occ:1.00
|
OD1
|
A:ASN61
|
2.2
|
30.7
|
1.0
|
OD1
|
A:ASP59
|
2.3
|
32.2
|
1.0
|
O
|
A:HOH205
|
2.4
|
33.0
|
1.0
|
O
|
A:ALA65
|
2.4
|
31.4
|
1.0
|
OD1
|
A:ASP63
|
2.4
|
30.3
|
1.0
|
OE1
|
A:GLU70
|
2.5
|
31.9
|
1.0
|
OE2
|
A:GLU70
|
2.5
|
29.7
|
1.0
|
CD
|
A:GLU70
|
2.9
|
27.9
|
1.0
|
HA
|
A:ASP59
|
3.2
|
31.8
|
1.0
|
CG
|
A:ASP63
|
3.2
|
33.3
|
1.0
|
CG
|
A:ASN61
|
3.4
|
27.6
|
1.0
|
CG
|
A:ASP59
|
3.4
|
31.8
|
1.0
|
H
|
A:ASP63
|
3.5
|
34.6
|
1.0
|
C
|
A:ALA65
|
3.6
|
32.2
|
1.0
|
OD2
|
A:ASP63
|
3.6
|
36.1
|
1.0
|
H
|
A:ALA65
|
3.6
|
33.0
|
1.0
|
H
|
A:ASN61
|
3.6
|
34.5
|
1.0
|
HD21
|
A:ASN61
|
3.7
|
30.1
|
1.0
|
HA
|
A:VAL66
|
3.8
|
29.8
|
1.0
|
H
|
A:ASN67
|
3.9
|
29.1
|
1.0
|
ND2
|
A:ASN61
|
4.0
|
29.2
|
1.0
|
CA
|
A:ASP59
|
4.0
|
31.2
|
1.0
|
H
|
A:ILE60
|
4.2
|
28.5
|
1.0
|
CB
|
A:ASP59
|
4.2
|
32.5
|
1.0
|
N
|
A:ALA65
|
4.3
|
32.6
|
1.0
|
OD2
|
A:ASP59
|
4.3
|
32.9
|
1.0
|
C
|
A:ASP59
|
4.3
|
30.5
|
1.0
|
HB2
|
A:ASP59
|
4.3
|
33.3
|
1.0
|
N
|
A:ASP63
|
4.4
|
33.7
|
1.0
|
CG
|
A:GLU70
|
4.4
|
31.0
|
1.0
|
N
|
A:ASN61
|
4.4
|
32.9
|
1.0
|
N
|
A:ILE60
|
4.4
|
28.2
|
1.0
|
N
|
A:VAL66
|
4.4
|
31.4
|
1.0
|
CB
|
A:ASP63
|
4.5
|
31.0
|
1.0
|
H
|
A:THR62
|
4.5
|
34.0
|
1.0
|
CA
|
A:ALA65
|
4.5
|
31.0
|
1.0
|
HB3
|
A:ALA65
|
4.5
|
39.1
|
1.0
|
CA
|
A:VAL66
|
4.5
|
29.8
|
1.0
|
N
|
A:ASN67
|
4.6
|
28.7
|
1.0
|
HB3
|
A:ASP63
|
4.7
|
31.3
|
1.0
|
CB
|
A:ASN61
|
4.7
|
31.6
|
1.0
|
H
|
A:GLY64
|
4.7
|
34.0
|
1.0
|
N
|
A:THR62
|
4.7
|
31.9
|
1.0
|
HG21
|
D:THR65
|
4.7
|
54.3
|
1.0
|
HG3
|
A:GLU70
|
4.8
|
32.0
|
1.0
|
HG2
|
A:GLU70
|
4.8
|
32.0
|
1.0
|
HB3
|
A:ASN67
|
4.8
|
33.5
|
1.0
|
HD22
|
A:ASN61
|
4.8
|
30.1
|
1.0
|
CA
|
A:ASP63
|
4.9
|
32.5
|
1.0
|
CA
|
A:ASN61
|
4.9
|
33.8
|
1.0
|
HG12
|
A:ILE60
|
4.9
|
35.2
|
1.0
|
HB2
|
A:GLU70
|
4.9
|
33.0
|
1.0
|
C
|
A:ASN61
|
5.0
|
34.6
|
1.0
|
HB3
|
A:ASN61
|
5.0
|
33.0
|
1.0
|
N
|
A:GLY64
|
5.0
|
34.2
|
1.0
|
|
Calcium binding site 2 out
of 8 in 8sjb
Go back to
Calcium Binding Sites List in 8sjb
Calcium binding site 2 out
of 8 in the Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca102
b:30.6
occ:0.52
|
O
|
A:ALA28
|
2.2
|
33.0
|
1.0
|
O
|
A:SER20
|
2.3
|
37.1
|
1.0
|
O
|
A:LYS23
|
2.3
|
36.2
|
1.0
|
O
|
A:ASN25
|
2.3
|
33.6
|
1.0
|
O
|
A:HOH208
|
2.5
|
33.3
|
1.0
|
HE2
|
A:TYR30
|
3.0
|
40.4
|
1.0
|
HA
|
A:SER20
|
3.1
|
31.0
|
1.0
|
C
|
A:SER20
|
3.3
|
32.1
|
1.0
|
H
|
A:LYS23
|
3.3
|
39.8
|
1.0
|
C
|
A:ALA28
|
3.4
|
34.3
|
1.0
|
C
|
A:ASN25
|
3.4
|
32.8
|
1.0
|
H
|
A:ALA28
|
3.5
|
32.3
|
1.0
|
HB3
|
A:ALA28
|
3.5
|
32.6
|
1.0
|
C
|
A:LYS23
|
3.5
|
42.4
|
1.0
|
HA
|
A:PHE26
|
3.6
|
34.9
|
1.0
|
CE2
|
A:TYR30
|
3.6
|
39.1
|
1.0
|
CA
|
A:SER20
|
3.7
|
31.0
|
1.0
|
HB2
|
A:SER20
|
3.8
|
30.2
|
1.0
|
HD1
|
A:PHE26
|
3.9
|
35.1
|
1.0
|
N
|
A:ASN25
|
4.0
|
33.5
|
1.0
|
N
|
A:LYS23
|
4.1
|
37.1
|
1.0
|
HD2
|
A:TYR30
|
4.1
|
39.9
|
1.0
|
C
|
A:GLY24
|
4.1
|
33.4
|
1.0
|
HA
|
A:VAL29
|
4.1
|
30.3
|
1.0
|
CA
|
A:ALA28
|
4.1
|
33.9
|
1.0
|
N
|
A:ALA28
|
4.1
|
31.1
|
1.0
|
H
|
A:ASN25
|
4.1
|
35.2
|
1.0
|
CD2
|
A:TYR30
|
4.2
|
38.7
|
1.0
|
HG3
|
A:LYS23
|
4.2
|
47.8
|
1.0
|
CB
|
A:ALA28
|
4.2
|
31.3
|
1.0
|
N
|
A:PHE26
|
4.3
|
33.2
|
1.0
|
CA
|
A:PHE26
|
4.3
|
33.2
|
1.0
|
HA3
|
A:GLY24
|
4.3
|
41.7
|
1.0
|
CB
|
A:SER20
|
4.3
|
30.4
|
1.0
|
CA
|
A:ASN25
|
4.3
|
34.6
|
1.0
|
CZ
|
A:TYR30
|
4.4
|
41.2
|
1.0
|
O
|
A:GLY24
|
4.4
|
37.1
|
1.0
|
N
|
A:LEU21
|
4.4
|
30.9
|
1.0
|
CA
|
A:LYS23
|
4.4
|
43.3
|
1.0
|
N
|
A:VAL29
|
4.5
|
30.4
|
1.0
|
H
|
A:ILE22
|
4.5
|
36.8
|
1.0
|
N
|
A:GLY24
|
4.5
|
40.2
|
1.0
|
O
|
A:TYR19
|
4.5
|
36.6
|
1.0
|
HB1
|
A:ALA28
|
4.5
|
32.6
|
1.0
|
CA
|
A:GLY24
|
4.5
|
39.4
|
1.0
|
HA
|
A:LEU21
|
4.5
|
34.2
|
1.0
|
OH
|
A:TYR30
|
4.6
|
38.0
|
1.0
|
OD2
|
A:ASP33
|
4.6
|
43.1
|
1.0
|
HB3
|
A:ASN25
|
4.6
|
39.9
|
1.0
|
N
|
A:ILE22
|
4.7
|
34.6
|
1.0
|
CA
|
A:VAL29
|
4.8
|
30.0
|
1.0
|
C
|
A:PHE26
|
4.8
|
33.0
|
1.0
|
H
|
A:TYR30
|
4.8
|
35.2
|
1.0
|
HG2
|
A:LYS23
|
4.8
|
47.8
|
1.0
|
CD1
|
A:PHE26
|
4.9
|
33.4
|
1.0
|
CA
|
A:LEU21
|
4.9
|
33.0
|
1.0
|
CG
|
A:LYS23
|
4.9
|
43.7
|
1.0
|
N
|
A:SER20
|
4.9
|
30.9
|
1.0
|
HB3
|
A:SER20
|
4.9
|
30.2
|
1.0
|
HB
|
A:ILE22
|
5.0
|
38.4
|
1.0
|
C
|
A:LEU21
|
5.0
|
37.1
|
1.0
|
HB2
|
A:ALA28
|
5.0
|
32.6
|
1.0
|
|
Calcium binding site 3 out
of 8 in 8sjb
Go back to
Calcium Binding Sites List in 8sjb
Calcium binding site 3 out
of 8 in the Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca101
b:25.7
occ:1.00
|
O
|
B:ALA65
|
2.3
|
27.1
|
1.0
|
O
|
B:HOH204
|
2.3
|
30.5
|
1.0
|
OD1
|
B:ASP59
|
2.4
|
26.4
|
1.0
|
OD1
|
B:ASN61
|
2.4
|
27.4
|
1.0
|
OD1
|
B:ASP63
|
2.4
|
27.7
|
1.0
|
OE1
|
B:GLU70
|
2.4
|
31.4
|
1.0
|
OE2
|
B:GLU70
|
2.5
|
28.4
|
1.0
|
CD
|
B:GLU70
|
2.8
|
30.0
|
1.0
|
HA
|
B:ASP59
|
3.2
|
28.4
|
1.0
|
CG
|
B:ASP63
|
3.3
|
30.7
|
1.0
|
C
|
B:ALA65
|
3.4
|
27.5
|
1.0
|
CG
|
B:ASP59
|
3.5
|
27.1
|
1.0
|
CG
|
B:ASN61
|
3.5
|
29.2
|
1.0
|
H
|
B:ALA65
|
3.6
|
29.6
|
1.0
|
H
|
B:ASP63
|
3.6
|
28.1
|
1.0
|
H
|
B:ASN61
|
3.7
|
28.3
|
1.0
|
OD2
|
B:ASP63
|
3.7
|
32.2
|
1.0
|
HA
|
B:VAL66
|
3.7
|
26.4
|
1.0
|
HD21
|
B:ASN61
|
3.8
|
30.0
|
1.0
|
H
|
B:ASN67
|
3.8
|
25.3
|
1.0
|
CA
|
B:ASP59
|
4.0
|
28.5
|
1.0
|
ND2
|
B:ASN61
|
4.1
|
29.4
|
1.0
|
HB3
|
B:ALA65
|
4.1
|
35.1
|
1.0
|
CB
|
B:ASP59
|
4.2
|
28.6
|
1.0
|
H
|
B:ILE60
|
4.2
|
28.3
|
1.0
|
N
|
B:ALA65
|
4.3
|
29.8
|
1.0
|
HB2
|
B:ASP59
|
4.3
|
28.6
|
1.0
|
CG
|
B:GLU70
|
4.3
|
27.4
|
1.0
|
N
|
B:VAL66
|
4.3
|
27.9
|
1.0
|
CA
|
B:ALA65
|
4.3
|
31.8
|
1.0
|
OD2
|
B:ASP59
|
4.4
|
28.9
|
1.0
|
C
|
B:ASP59
|
4.4
|
29.4
|
1.0
|
CA
|
B:VAL66
|
4.4
|
26.8
|
1.0
|
N
|
B:ASP63
|
4.4
|
27.9
|
1.0
|
N
|
B:ILE60
|
4.5
|
28.5
|
1.0
|
N
|
B:ASN61
|
4.5
|
28.0
|
1.0
|
N
|
B:ASN67
|
4.5
|
25.7
|
1.0
|
CB
|
B:ASP63
|
4.6
|
28.5
|
1.0
|
H
|
B:THR62
|
4.6
|
27.3
|
1.0
|
HG3
|
B:GLU70
|
4.7
|
27.8
|
1.0
|
CB
|
B:ALA65
|
4.7
|
34.3
|
1.0
|
HG2
|
B:GLU70
|
4.7
|
27.8
|
1.0
|
H
|
B:GLY64
|
4.7
|
30.0
|
1.0
|
HB3
|
B:ASP63
|
4.7
|
28.9
|
1.0
|
CB
|
B:ASN61
|
4.8
|
26.9
|
1.0
|
HG21
|
C:THR65
|
4.8
|
39.2
|
1.0
|
HE3
|
C:MET78
|
4.8
|
37.0
|
1.0
|
N
|
B:THR62
|
4.8
|
26.4
|
1.0
|
HG12
|
B:ILE60
|
4.9
|
31.4
|
1.0
|
HD22
|
B:ASN61
|
4.9
|
30.0
|
1.0
|
HB2
|
B:GLU70
|
4.9
|
23.1
|
1.0
|
HB3
|
B:ASN67
|
4.9
|
29.6
|
1.0
|
CA
|
B:ASP63
|
4.9
|
27.8
|
1.0
|
CA
|
B:ASN61
|
5.0
|
29.6
|
1.0
|
C
|
B:VAL66
|
5.0
|
27.0
|
1.0
|
|
Calcium binding site 4 out
of 8 in 8sjb
Go back to
Calcium Binding Sites List in 8sjb
Calcium binding site 4 out
of 8 in the Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca102
b:29.2
occ:0.55
|
O
|
B:ALA28
|
2.3
|
29.4
|
1.0
|
O
|
B:ASN25
|
2.3
|
29.7
|
1.0
|
O
|
B:LYS23
|
2.4
|
30.2
|
1.0
|
O
|
B:SER20
|
2.4
|
30.4
|
1.0
|
O
|
B:HOH229
|
2.4
|
30.1
|
1.0
|
HE2
|
B:TYR30
|
3.1
|
35.2
|
1.0
|
HA
|
B:PHE26
|
3.1
|
37.4
|
1.0
|
HA
|
B:SER20
|
3.2
|
27.6
|
1.0
|
H
|
B:LYS23
|
3.2
|
37.5
|
1.0
|
H
|
B:ALA28
|
3.3
|
31.9
|
1.0
|
C
|
B:SER20
|
3.3
|
31.6
|
1.0
|
C
|
B:ASN25
|
3.4
|
30.0
|
1.0
|
C
|
B:ALA28
|
3.4
|
31.6
|
1.0
|
C
|
B:LYS23
|
3.6
|
34.6
|
1.0
|
HB3
|
B:ALA28
|
3.7
|
33.3
|
1.0
|
CE2
|
B:TYR30
|
3.7
|
34.6
|
1.0
|
CA
|
B:SER20
|
3.7
|
28.3
|
1.0
|
HD1
|
B:PHE26
|
3.8
|
43.7
|
1.0
|
CA
|
B:PHE26
|
3.9
|
35.2
|
1.0
|
HB2
|
B:SER20
|
3.9
|
27.1
|
1.0
|
N
|
B:LYS23
|
4.0
|
34.7
|
1.0
|
N
|
B:ALA28
|
4.0
|
31.2
|
1.0
|
HD2
|
B:TYR30
|
4.1
|
33.2
|
1.0
|
HA
|
B:VAL29
|
4.1
|
27.5
|
1.0
|
N
|
B:PHE26
|
4.1
|
36.5
|
1.0
|
HH
|
B:TYR30
|
4.1
|
33.6
|
1.0
|
CA
|
B:ALA28
|
4.2
|
32.1
|
1.0
|
N
|
B:ASN25
|
4.2
|
33.6
|
1.0
|
CD2
|
B:TYR30
|
4.2
|
32.9
|
1.0
|
C
|
B:GLY24
|
4.3
|
34.1
|
1.0
|
H
|
B:ILE22
|
4.3
|
35.7
|
1.0
|
CB
|
B:ALA28
|
4.4
|
32.3
|
1.0
|
HA3
|
B:GLY24
|
4.4
|
37.5
|
1.0
|
HG3
|
B:LYS23
|
4.4
|
41.6
|
1.0
|
H
|
B:ASN25
|
4.4
|
34.8
|
1.0
|
C
|
B:PHE26
|
4.4
|
36.8
|
1.0
|
CA
|
B:LYS23
|
4.4
|
34.0
|
1.0
|
CB
|
B:SER20
|
4.4
|
27.9
|
1.0
|
CA
|
B:ASN25
|
4.4
|
31.2
|
1.0
|
O
|
B:TYR19
|
4.4
|
32.0
|
1.0
|
N
|
B:VAL29
|
4.5
|
29.8
|
1.0
|
CZ
|
B:TYR30
|
4.5
|
33.5
|
1.0
|
N
|
B:LEU21
|
4.5
|
29.6
|
1.0
|
N
|
B:GLY24
|
4.5
|
35.1
|
1.0
|
CD1
|
B:PHE26
|
4.5
|
40.5
|
1.0
|
OH
|
B:TYR30
|
4.6
|
33.2
|
1.0
|
N
|
B:ILE22
|
4.6
|
33.8
|
1.0
|
CA
|
B:GLY24
|
4.6
|
35.1
|
1.0
|
HA
|
B:LEU21
|
4.7
|
30.9
|
1.0
|
OD2
|
B:ASP33
|
4.7
|
33.7
|
1.0
|
O
|
B:GLY24
|
4.7
|
37.9
|
1.0
|
HB3
|
B:ASN25
|
4.7
|
32.5
|
1.0
|
HG2
|
B:LYS23
|
4.7
|
41.6
|
1.0
|
CA
|
B:VAL29
|
4.8
|
27.5
|
1.0
|
HB1
|
B:ALA28
|
4.8
|
33.3
|
1.0
|
O
|
B:PHE26
|
4.8
|
37.7
|
1.0
|
N
|
B:ASN27
|
4.9
|
33.6
|
1.0
|
C
|
B:LEU21
|
4.9
|
34.4
|
1.0
|
H
|
B:PHE26
|
4.9
|
39.0
|
1.0
|
HB
|
B:ILE22
|
4.9
|
38.9
|
1.0
|
CA
|
B:LEU21
|
4.9
|
30.6
|
1.0
|
CG
|
B:LYS23
|
5.0
|
38.1
|
1.0
|
HG
|
B:SER20
|
5.0
|
30.0
|
1.0
|
H
|
B:TYR30
|
5.0
|
28.7
|
1.0
|
N
|
B:SER20
|
5.0
|
29.1
|
1.0
|
|
Calcium binding site 5 out
of 8 in 8sjb
Go back to
Calcium Binding Sites List in 8sjb
Calcium binding site 5 out
of 8 in the Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:29.1
occ:1.00
|
OD1
|
C:ASN66
|
2.3
|
33.3
|
1.0
|
O
|
C:GLN70
|
2.3
|
30.0
|
1.0
|
O
|
C:HOH333
|
2.3
|
34.4
|
1.0
|
OD1
|
C:ASP64
|
2.3
|
34.2
|
1.0
|
OD1
|
C:ASP68
|
2.4
|
33.6
|
1.0
|
OE1
|
C:GLU75
|
2.5
|
30.9
|
1.0
|
OE2
|
C:GLU75
|
2.6
|
29.9
|
1.0
|
CD
|
C:GLU75
|
2.9
|
27.8
|
1.0
|
CG
|
C:ASP68
|
3.3
|
37.4
|
1.0
|
CG
|
C:ASN66
|
3.3
|
35.1
|
1.0
|
H
|
C:ASP68
|
3.4
|
38.0
|
1.0
|
CG
|
C:ASP64
|
3.5
|
34.5
|
1.0
|
HA
|
C:ASP64
|
3.5
|
32.9
|
1.0
|
C
|
C:GLN70
|
3.5
|
30.6
|
1.0
|
H
|
C:GLN70
|
3.6
|
32.1
|
1.0
|
HD22
|
C:ASN66
|
3.6
|
45.7
|
1.0
|
HA
|
C:LEU71
|
3.6
|
25.6
|
1.0
|
H
|
C:ASN66
|
3.6
|
34.0
|
1.0
|
OD2
|
C:ASP68
|
3.7
|
39.2
|
1.0
|
H
|
C:SER72
|
3.8
|
27.2
|
1.0
|
ND2
|
C:ASN66
|
3.8
|
42.1
|
1.0
|
CA
|
C:ASP64
|
4.2
|
32.5
|
1.0
|
HD23
|
C:LEU71
|
4.2
|
34.0
|
1.0
|
HG2
|
C:GLN70
|
4.2
|
40.8
|
1.0
|
N
|
C:ASP68
|
4.3
|
35.4
|
1.0
|
H
|
C:ALA67
|
4.3
|
37.1
|
1.0
|
CB
|
C:ASP64
|
4.3
|
29.3
|
1.0
|
N
|
C:GLN70
|
4.3
|
31.7
|
1.0
|
HG3
|
C:GLN70
|
4.3
|
40.8
|
1.0
|
OD2
|
C:ASP64
|
4.4
|
34.9
|
1.0
|
CA
|
C:LEU71
|
4.4
|
26.6
|
1.0
|
CG
|
C:GLU75
|
4.4
|
29.3
|
1.0
|
N
|
C:ASN66
|
4.4
|
32.4
|
1.0
|
N
|
C:LEU71
|
4.4
|
29.6
|
1.0
|
N
|
C:SER72
|
4.5
|
27.1
|
1.0
|
C
|
C:ASP64
|
4.5
|
35.3
|
1.0
|
HB2
|
C:ASP64
|
4.5
|
29.1
|
1.0
|
CB
|
C:ASP68
|
4.5
|
36.6
|
1.0
|
H
|
C:THR65
|
4.5
|
31.4
|
1.0
|
CA
|
C:GLN70
|
4.5
|
32.2
|
1.0
|
CB
|
C:ASN66
|
4.5
|
35.4
|
1.0
|
O
|
C:HOH329
|
4.6
|
35.6
|
1.0
|
N
|
C:ALA67
|
4.6
|
34.3
|
1.0
|
H
|
C:LYS69
|
4.6
|
34.8
|
1.0
|
N
|
C:THR65
|
4.7
|
30.3
|
1.0
|
HD21
|
C:ASN66
|
4.7
|
45.7
|
1.0
|
CG
|
C:GLN70
|
4.7
|
38.9
|
1.0
|
HG3
|
C:GLU75
|
4.7
|
30.2
|
1.0
|
CA
|
C:ASP68
|
4.8
|
35.3
|
1.0
|
HB3
|
C:ASN66
|
4.8
|
37.5
|
1.0
|
HB3
|
C:ASP68
|
4.8
|
39.4
|
1.0
|
CA
|
C:ASN66
|
4.8
|
34.9
|
1.0
|
HG2
|
C:GLU75
|
4.8
|
30.2
|
1.0
|
C
|
C:ASN66
|
4.8
|
38.4
|
1.0
|
HB3
|
C:SER72
|
4.9
|
36.3
|
1.0
|
C
|
C:LEU71
|
4.9
|
29.2
|
1.0
|
N
|
C:LYS69
|
4.9
|
32.4
|
1.0
|
HB2
|
C:GLU75
|
4.9
|
27.9
|
1.0
|
C
|
C:ASP68
|
5.0
|
33.9
|
1.0
|
HD22
|
C:LEU71
|
5.0
|
34.0
|
1.0
|
|
Calcium binding site 6 out
of 8 in 8sjb
Go back to
Calcium Binding Sites List in 8sjb
Calcium binding site 6 out
of 8 in the Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca203
b:29.9
occ:1.00
|
O
|
C:LEU23
|
2.3
|
31.8
|
1.0
|
O
|
C:SER20
|
2.4
|
31.0
|
1.0
|
O
|
C:THR28
|
2.4
|
28.7
|
1.0
|
O
|
C:HIS25
|
2.4
|
30.3
|
1.0
|
O
|
C:HOH356
|
2.4
|
30.7
|
1.0
|
OE1
|
C:GLU33
|
2.4
|
31.4
|
1.0
|
OE2
|
C:GLU33
|
2.6
|
33.9
|
1.0
|
CD
|
C:GLU33
|
2.9
|
34.5
|
1.0
|
HA
|
C:SER20
|
3.4
|
30.7
|
1.0
|
H
|
C:LEU23
|
3.4
|
34.6
|
1.0
|
C
|
C:SER20
|
3.4
|
28.8
|
1.0
|
C
|
C:LEU23
|
3.5
|
34.2
|
1.0
|
C
|
C:HIS25
|
3.5
|
34.3
|
1.0
|
C
|
C:THR28
|
3.6
|
29.5
|
1.0
|
H
|
C:THR28
|
3.7
|
33.6
|
1.0
|
H
|
C:ASN30
|
3.7
|
28.1
|
1.0
|
HA
|
C:LEU29
|
3.8
|
27.9
|
1.0
|
HA
|
C:PRO26
|
3.8
|
34.9
|
1.0
|
CA
|
C:SER20
|
3.9
|
30.4
|
1.0
|
HB2
|
C:SER20
|
4.0
|
30.7
|
1.0
|
N
|
C:HIS25
|
4.1
|
32.7
|
1.0
|
N
|
C:LEU23
|
4.1
|
33.2
|
1.0
|
C
|
C:GLY24
|
4.2
|
37.1
|
1.0
|
H
|
C:HIS25
|
4.2
|
33.4
|
1.0
|
HB2
|
C:LEU23
|
4.2
|
35.7
|
1.0
|
OG1
|
C:THR28
|
4.3
|
32.0
|
1.0
|
HB3
|
C:HIS25
|
4.3
|
39.1
|
1.0
|
HA3
|
C:GLY24
|
4.3
|
44.5
|
1.0
|
CA
|
C:LEU23
|
4.4
|
34.5
|
1.0
|
N
|
C:THR28
|
4.4
|
32.2
|
1.0
|
CA
|
C:HIS25
|
4.4
|
32.2
|
1.0
|
CG
|
C:GLU33
|
4.4
|
32.2
|
1.0
|
N
|
C:ASN30
|
4.4
|
28.3
|
1.0
|
H
|
C:LYS22
|
4.4
|
31.6
|
1.0
|
CA
|
C:PRO26
|
4.4
|
32.9
|
1.0
|
N
|
C:LEU29
|
4.4
|
28.0
|
1.0
|
N
|
C:PRO26
|
4.4
|
33.9
|
1.0
|
O
|
C:GLY24
|
4.5
|
36.5
|
1.0
|
CA
|
C:LEU29
|
4.5
|
28.4
|
1.0
|
CA
|
C:THR28
|
4.5
|
30.2
|
1.0
|
N
|
C:GLY24
|
4.5
|
35.5
|
1.0
|
N
|
C:VAL21
|
4.5
|
29.3
|
1.0
|
CB
|
C:SER20
|
4.6
|
30.4
|
1.0
|
CA
|
C:GLY24
|
4.6
|
41.0
|
1.0
|
HA
|
C:VAL21
|
4.6
|
32.4
|
1.0
|
HB3
|
C:ASN30
|
4.6
|
33.1
|
1.0
|
O
|
C:TYR19
|
4.7
|
31.6
|
1.0
|
N
|
C:LYS22
|
4.7
|
31.1
|
1.0
|
C
|
C:PRO26
|
4.7
|
37.3
|
1.0
|
HG3
|
C:GLU33
|
4.7
|
33.3
|
1.0
|
CB
|
C:LEU23
|
4.8
|
34.0
|
1.0
|
HG2
|
C:GLU33
|
4.8
|
33.3
|
1.0
|
C
|
C:VAL21
|
4.9
|
32.5
|
1.0
|
C
|
C:LEU29
|
4.9
|
28.6
|
1.0
|
HG1
|
C:THR28
|
4.9
|
33.5
|
1.0
|
HB2
|
C:GLU33
|
4.9
|
30.3
|
1.0
|
CB
|
C:HIS25
|
4.9
|
37.4
|
1.0
|
CA
|
C:VAL21
|
4.9
|
32.0
|
1.0
|
|
Calcium binding site 7 out
of 8 in 8sjb
Go back to
Calcium Binding Sites List in 8sjb
Calcium binding site 7 out
of 8 in the Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca201
b:38.7
occ:1.00
|
O
|
D:GLN70
|
2.2
|
47.9
|
1.0
|
O
|
D:HOH331
|
2.3
|
44.2
|
1.0
|
OD1
|
D:ASN66
|
2.3
|
42.4
|
1.0
|
OD1
|
D:ASP64
|
2.3
|
40.4
|
1.0
|
OD1
|
D:ASP68
|
2.4
|
46.0
|
1.0
|
OE1
|
D:GLU75
|
2.4
|
44.2
|
1.0
|
OE2
|
D:GLU75
|
2.5
|
42.1
|
1.0
|
CD
|
D:GLU75
|
2.8
|
38.0
|
1.0
|
CG
|
D:ASP68
|
3.3
|
54.2
|
1.0
|
C
|
D:GLN70
|
3.4
|
42.0
|
1.0
|
CG
|
D:ASN66
|
3.4
|
46.1
|
1.0
|
H
|
D:ASP68
|
3.5
|
48.6
|
1.0
|
H
|
D:GLN70
|
3.5
|
53.4
|
1.0
|
CG
|
D:ASP64
|
3.5
|
38.5
|
1.0
|
HA
|
D:ASP64
|
3.5
|
37.9
|
1.0
|
HA
|
D:LEU71
|
3.6
|
41.2
|
1.0
|
OD2
|
D:ASP68
|
3.7
|
54.2
|
1.0
|
H
|
D:ASN66
|
3.7
|
39.6
|
1.0
|
H
|
D:SER72
|
3.8
|
42.4
|
1.0
|
HD21
|
D:ASN66
|
3.8
|
54.1
|
1.0
|
ND2
|
D:ASN66
|
4.0
|
50.0
|
1.0
|
HB2
|
D:GLN70
|
4.0
|
66.1
|
1.0
|
HD23
|
D:LEU71
|
4.2
|
46.7
|
1.0
|
N
|
D:GLN70
|
4.2
|
48.0
|
1.0
|
CA
|
D:ASP64
|
4.2
|
37.3
|
1.0
|
N
|
D:LEU71
|
4.3
|
42.3
|
1.0
|
CA
|
D:GLN70
|
4.3
|
46.5
|
1.0
|
H
|
D:ALA67
|
4.3
|
44.2
|
1.0
|
N
|
D:ASP68
|
4.3
|
43.6
|
1.0
|
CG
|
D:GLU75
|
4.3
|
37.8
|
1.0
|
CA
|
D:LEU71
|
4.3
|
39.5
|
1.0
|
CB
|
D:ASP64
|
4.3
|
40.6
|
1.0
|
OD2
|
D:ASP64
|
4.4
|
43.1
|
1.0
|
N
|
D:SER72
|
4.5
|
40.0
|
1.0
|
N
|
D:ASN66
|
4.5
|
38.0
|
1.0
|
C
|
D:ASP64
|
4.5
|
38.9
|
1.0
|
CB
|
D:ASP68
|
4.5
|
51.7
|
1.0
|
HB2
|
D:ASP64
|
4.5
|
41.9
|
1.0
|
H
|
D:THR65
|
4.6
|
38.4
|
1.0
|
CB
|
D:ASN66
|
4.6
|
44.5
|
1.0
|
N
|
D:ALA67
|
4.6
|
41.7
|
1.0
|
CB
|
D:GLN70
|
4.6
|
58.5
|
1.0
|
HG3
|
D:GLU75
|
4.7
|
40.5
|
1.0
|
O
|
D:HOH325
|
4.7
|
42.2
|
1.0
|
HG2
|
D:GLU75
|
4.7
|
40.5
|
1.0
|
N
|
D:THR65
|
4.7
|
36.7
|
1.0
|
HB3
|
D:ASN66
|
4.7
|
47.4
|
1.0
|
H
|
D:LYS69
|
4.7
|
57.8
|
1.0
|
HB3
|
D:ASP68
|
4.8
|
58.3
|
1.0
|
CA
|
D:ASP68
|
4.8
|
50.8
|
1.0
|
HB3
|
D:SER72
|
4.8
|
42.2
|
1.0
|
HD22
|
D:ASN66
|
4.8
|
54.1
|
1.0
|
C
|
D:LEU71
|
4.9
|
40.9
|
1.0
|
C
|
D:ASN66
|
4.9
|
44.5
|
1.0
|
CA
|
D:ASN66
|
4.9
|
41.5
|
1.0
|
N
|
D:LYS69
|
4.9
|
49.9
|
1.0
|
HB2
|
D:GLU75
|
4.9
|
36.8
|
1.0
|
C
|
D:ASP68
|
5.0
|
55.0
|
1.0
|
O
|
D:ASP64
|
5.0
|
38.1
|
1.0
|
|
Calcium binding site 8 out
of 8 in 8sjb
Go back to
Calcium Binding Sites List in 8sjb
Calcium binding site 8 out
of 8 in the Crystal Structure of ZN2+ Bound Calprotectin Variant H87C
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of ZN2+ Bound Calprotectin Variant H87C within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca202
b:54.3
occ:0.78
|
O
|
D:HOH326
|
2.3
|
61.0
|
1.0
|
O
|
D:LEU23
|
2.3
|
62.0
|
1.0
|
O
|
D:SER20
|
2.3
|
56.5
|
1.0
|
O
|
D:THR28
|
2.4
|
51.3
|
1.0
|
O
|
D:HIS25
|
2.4
|
55.7
|
1.0
|
OE1
|
D:GLU33
|
3.2
|
63.5
|
1.0
|
HA
|
D:SER20
|
3.2
|
54.9
|
1.0
|
C
|
D:SER20
|
3.4
|
57.7
|
1.0
|
OE2
|
D:GLU33
|
3.4
|
72.2
|
1.0
|
C
|
D:HIS25
|
3.5
|
65.0
|
1.0
|
H
|
D:LEU23
|
3.5
|
95.1
|
1.0
|
C
|
D:LEU23
|
3.5
|
73.9
|
1.0
|
C
|
D:THR28
|
3.6
|
49.0
|
1.0
|
H
|
D:THR28
|
3.6
|
57.7
|
1.0
|
CD
|
D:GLU33
|
3.7
|
72.0
|
1.0
|
CA
|
D:SER20
|
3.8
|
50.4
|
1.0
|
HA
|
D:PRO26
|
3.8
|
77.2
|
1.0
|
HA
|
D:LEU29
|
3.8
|
50.4
|
1.0
|
HB2
|
D:SER20
|
3.9
|
54.5
|
1.0
|
N
|
D:HIS25
|
4.0
|
68.1
|
1.0
|
H
|
D:HIS25
|
4.1
|
79.0
|
1.0
|
C
|
D:GLY24
|
4.1
|
74.3
|
1.0
|
H
|
D:ASN30
|
4.1
|
58.2
|
1.0
|
HA3
|
D:GLY24
|
4.2
|
86.5
|
1.0
|
N
|
D:LEU23
|
4.2
|
77.5
|
1.0
|
N
|
D:THR28
|
4.3
|
55.0
|
1.0
|
CA
|
D:HIS25
|
4.3
|
70.5
|
1.0
|
HB3
|
D:LEU23
|
4.3
|
87.7
|
1.0
|
HB3
|
D:HIS25
|
4.4
|
86.1
|
1.0
|
OG1
|
D:THR28
|
4.4
|
55.9
|
1.0
|
CB
|
D:SER20
|
4.4
|
50.1
|
1.0
|
CA
|
D:LEU23
|
4.4
|
77.2
|
1.0
|
N
|
D:PRO26
|
4.4
|
69.1
|
1.0
|
CA
|
D:PRO26
|
4.4
|
66.9
|
1.0
|
N
|
D:GLY24
|
4.5
|
70.1
|
1.0
|
CA
|
D:GLY24
|
4.5
|
74.3
|
1.0
|
N
|
D:LEU29
|
4.5
|
46.1
|
1.0
|
CA
|
D:THR28
|
4.5
|
52.1
|
1.0
|
N
|
D:VAL21
|
4.5
|
58.1
|
1.0
|
O
|
D:GLY24
|
4.5
|
73.9
|
1.0
|
CA
|
D:LEU29
|
4.6
|
48.1
|
1.0
|
C
|
D:PRO26
|
4.6
|
63.1
|
1.0
|
HA
|
D:VAL21
|
4.6
|
76.7
|
1.0
|
OE1
|
D:GLN70
|
4.7
|
61.0
|
1.0
|
O
|
D:TYR19
|
4.7
|
50.0
|
1.0
|
N
|
D:ASN30
|
4.7
|
53.8
|
1.0
|
CB
|
D:LEU23
|
4.9
|
71.3
|
1.0
|
CB
|
D:HIS25
|
4.9
|
74.0
|
1.0
|
HB3
|
D:ASN30
|
4.9
|
68.8
|
1.0
|
H
|
D:LYS22
|
5.0
|
71.1
|
1.0
|
N
|
D:ASP27
|
5.0
|
55.3
|
1.0
|
CA
|
D:VAL21
|
5.0
|
64.7
|
1.0
|
HB3
|
D:SER20
|
5.0
|
54.5
|
1.0
|
C
|
D:LEU29
|
5.0
|
52.8
|
1.0
|
|
Reference:
Y.R.Perera,
A.R.Nassif,
V.Garcia,
R.M.Guillen,
W.J.Chazin.
Crystal Structure of ZN2+ Bound Calprotectin To Be Published.
Page generated: Fri Jul 19 11:29:52 2024
|