Calcium in PDB 8skf: Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Lattice Translocation Disorder)

The structure of Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Lattice Translocation Disorder), PDB code: 8skf was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	81.53 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	85.822, 184.823, 163.066, 90, 90, 90
R / Rfree (%)	17.4 / 20.7

The binding sites of Calcium atom in the Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Lattice Translocation Disorder) (pdb code 8skf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Lattice Translocation Disorder), PDB code: 8skf:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Lattice Translocation Disorder)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Lattice Translocation Disorder) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:26.1 occ:1.00 O A:HOH658 2.2 28.1 1.0 OG1 A:THR26 2.6 22.9 1.0 O A:VAL180 2.6 18.5 1.0 O A:ASP93 2.6 18.5 1.0 OD1 A:ASP93 2.8 19.9 1.0 O A:ILE27 2.8 23.7 1.0 O A:HOH857 3.0 24.8 1.0 C A:ASP93 3.6 19.6 1.0 N A:ILE27 3.7 20.0 1.0 C A:ILE27 3.8 22.6 1.0 CG A:ASP93 3.8 22.1 1.0 C A:VAL180 3.8 23.6 1.0 CB A:THR26 3.9 16.7 1.0 CA A:ASP93 3.9 17.6 1.0 C A:THR26 4.2 19.1 1.0 CA A:THR26 4.3 15.7 1.0 CA A:ILE27 4.4 23.6 1.0 CG2 A:THR181 4.4 22.9 1.0 CB A:ASP93 4.5 16.9 1.0 CG1 A:VAL180 4.5 22.2 1.0 CD1 A:LEU35 4.6 23.5 1.0 CA A:THR181 4.6 18.7 1.0 CD A:PRO29 4.7 20.5 1.0 N A:THR181 4.7 20.3 1.0 OD2 A:ASP93 4.7 20.5 1.0 CA A:VAL180 4.8 17.8 1.0 O A:VAL329 4.8 19.9 1.0 N A:ASN28 4.8 18.7 1.0 N A:THR94 4.9 17.1 1.0 CG2 A:THR26 5.0 18.9 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Lattice Translocation Disorder)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Lattice Translocation Disorder) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca503 b:27.6 occ:1.00 O B:HOH795 2.2 33.0 1.0 OG1 B:THR26 2.5 19.8 1.0 O B:ASP93 2.5 19.2 1.0 O B:VAL180 2.6 21.4 1.0 OD1 B:ASP93 2.6 21.1 1.0 O B:ILE27 2.8 21.1 1.0 O B:HOH898 3.3 22.8 1.0 C B:ASP93 3.6 22.8 1.0 CG B:ASP93 3.7 18.8 1.0 N B:ILE27 3.8 20.8 1.0 C B:VAL180 3.8 19.7 1.0 C B:ILE27 3.8 26.1 1.0 CA B:ASP93 3.9 18.3 1.0 CB B:THR26 3.9 20.7 1.0 C B:THR26 4.3 21.6 1.0 CA B:THR26 4.4 21.1 1.0 CB B:ASP93 4.4 21.2 1.0 CG2 B:THR181 4.4 26.1 1.0 CG1 B:VAL180 4.4 25.5 1.0 CA B:ILE27 4.4 22.1 1.0 CA B:THR181 4.6 19.3 1.0 CD B:PRO29 4.6 23.2 1.0 N B:THR181 4.6 19.3 1.0 OD2 B:ASP93 4.6 17.0 1.0 O B:VAL329 4.8 21.6 1.0 CA B:VAL180 4.8 21.9 1.0 N B:THR94 4.8 16.7 1.0 N B:ASN28 4.9 21.2 1.0 CG2 B:THR26 4.9 27.2 1.0

L.Liu, S.Lovell, K.P.Battaile, A.Cooper. Crystal Structure of Betaine Aldehyde Dehydrogenase (Betb) From Klebsiella Aerogenes (Lattice Translocation Disorder) To Be Published.