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Calcium in PDB 8ski: Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx

Enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx

All present enzymatic activity of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx:
2.7.7.7;

Protein crystallography data

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx, PDB code: 8ski was solved by H.Jung, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.26 / 2.16
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 98.56, 98.56, 81.094, 90, 90, 120
R / Rfree (%) 20 / 24.9

Other elements in 8ski:

The structure of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx also contains other interesting chemical elements:

Fluorine (F) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx (pdb code 8ski). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx, PDB code: 8ski:

Calcium binding site 1 out of 1 in 8ski

Go back to Calcium Binding Sites List in 8ski
Calcium binding site 1 out of 1 in the Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Dna Polymerase Eta Incorporating 5F-Dutp Across Hx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:72.3
occ:1.00
 OD1 A:ASP13 2.0 52.3 1.0
OD2 A:ASP115 2.3 62.4 1.0
O15 A:B7P501 2.5 58.8 1.0
O A:MET14 2.5 38.1 1.0
CG A:ASP13 2.9 49.0 1.0
O19 A:B7P501 3.0 78.9 1.0
O10 A:B7P501 3.1 68.3 1.0
CG A:ASP115 3.3 50.0 1.0
C A:MET14 3.4 34.1 1.0
OD2 A:ASP13 3.4 57.4 1.0
P13 A:B7P501 3.5 88.8 1.0
N A:MET14 3.6 32.7 1.0
CB A:ASP115 3.7 42.0 1.0
O16 A:B7P501 3.8 71.2 1.0
O12 A:B7P501 3.8 82.7 1.0
P17 A:B7P501 3.9 73.4 1.0
P09 A:B7P501 3.9 78.0 1.0
C A:ASP13 4.0 34.2 1.0
CA A:MET14 4.0 32.2 1.0
O A:ASP115 4.1 34.5 1.0
CB A:ASP13 4.1 42.8 1.0
OD1 A:ASP115 4.2 48.0 1.0
C07 A:B7P501 4.2 66.6 1.0
CA A:ASP13 4.2 33.3 1.0
N A:ASP15 4.3 32.9 1.0
O08 A:B7P501 4.5 70.1 1.0
O20 A:B7P501 4.5 64.6 1.0
N A:CYS16 4.5 37.2 1.0
O A:HOH603 4.6 45.3 1.0
CA A:ASP15 4.6 36.4 1.0
CB A:MET14 4.6 33.2 1.0
O A:ASP13 4.6 30.3 1.0
OE1 A:GLU116 4.7 53.9 1.0
C A:ASP115 4.7 38.8 1.0
C A:ASP15 4.8 35.5 1.0
O14 A:B7P501 4.8 64.9 1.0
N A:PHE17 4.8 32.4 1.0
CB A:PHE17 4.9 31.2 1.0
CA A:ASP115 4.9 36.9 1.0

Reference:

H.Jung, H.Jung. N/A N/A.
Page generated: Thu Dec 28 01:47:44 2023

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