Calcium in PDB 8t1g: The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11

Protein crystallography data

The structure of The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11, PDB code: 8t1g was solved by T.Zhou, P.D.Kwong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.77 / 3.50
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 303.277, 303.277, 153.461, 90, 90, 90
R / Rfree (%) 18.2 / 21.5

Calcium Binding Sites:

The binding sites of Calcium atom in the The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11 (pdb code 8t1g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11, PDB code: 8t1g:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 8t1g

Go back to Calcium Binding Sites List in 8t1g
Calcium binding site 1 out of 3 in the The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:164.9
occ:1.00
OE1 A:GLU81 4.2 128.3 1.0
OD1 A:ASP119 4.5 137.0 1.0
O A:LYS120 4.7 125.7 1.0
OE2 A:GLU81 4.7 138.4 1.0
CD A:GLU81 4.9 130.5 1.0

Calcium binding site 2 out of 3 in 8t1g

Go back to Calcium Binding Sites List in 8t1g
Calcium binding site 2 out of 3 in the The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca401

b:170.8
occ:1.00
O C:LYS120 3.3 127.0 1.0
OD1 C:ASP119 3.8 142.4 1.0
OD2 C:ASP119 4.1 133.2 1.0
CG C:GLU121 4.3 146.9 1.0
C C:LYS120 4.3 127.5 1.0
CG C:ASP119 4.4 134.9 1.0
CA C:GLU121 4.5 136.5 1.0
CB C:GLU121 4.5 138.0 1.0
NH1 C:ARG172 4.6 146.7 1.0
OE1 C:GLU81 4.8 129.7 1.0
N C:GLU121 4.8 131.6 1.0

Calcium binding site 3 out of 3 in 8t1g

Go back to Calcium Binding Sites List in 8t1g
Calcium binding site 3 out of 3 in the The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca401

b:163.0
occ:1.00
OD1 E:ASP119 3.7 138.5 1.0
OE1 E:GLU81 4.1 144.4 1.0
O E:LYS120 4.3 124.4 1.0
OD2 E:ASP119 4.5 133.7 1.0
CG E:ASP119 4.5 130.2 1.0
OE2 E:GLU81 4.7 141.9 1.0
CD E:GLU81 4.8 139.6 1.0

Reference:

T.Zhou, P.D.Kwong. The Crystal Structure of Hemagglutinin Form A H7N9 Influenza Virus (A/Shanghai/1/2013) in Complex with Antibody 1E11 To Be Published.
Page generated: Fri Jul 19 11:56:45 2024

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