Calcium in PDB 8t5n: Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound)

Enzymatic activity of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound)

All present enzymatic activity of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound):
6.1.1.14;

Protein crystallography data

The structure of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound), PDB code: 8t5n was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.03 / 1.65
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 126.355, 126.355, 129.027, 90, 90, 120
R / Rfree (%) 15.6 / 17.1

Other elements in 8t5n:

The structure of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound) (pdb code 8t5n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound), PDB code: 8t5n:

Calcium binding site 1 out of 1 in 8t5n

Go back to Calcium Binding Sites List in 8t5n
Calcium binding site 1 out of 1 in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca503

b:73.7
occ:1.00
 O A:HOH921 2.8 51.1 1.0
N A:SER30 3.1 31.7 1.0
CA A:SER30 3.8 31.8 1.0
O A:THR28 3.9 34.4 1.0
CD A:LYS29 4.1 71.3 1.0
O A:HOH648 4.1 38.1 1.0
C A:LYS29 4.1 32.9 1.0
CA A:LYS29 4.1 31.6 1.0
N A:ALA31 4.2 27.6 1.0
NE1 A:TRP32 4.3 32.3 1.0
C A:SER30 4.3 31.2 1.0
NZ A:LYS29 4.4 74.0 1.0
O A:HOH702 4.5 30.0 1.0
CE2 A:TRP32 4.6 30.7 1.0
CZ2 A:TRP32 4.6 33.7 1.0
C A:THR28 4.7 34.9 1.0
O A:ALA31 4.7 25.2 1.0
CE A:LYS29 4.9 75.4 1.0
N A:LYS29 4.9 36.1 1.0

Reference:

S.Seibold, S.Lovell, K.P.Battaile, A.Derocher. Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (Amp-Mg Bound) To Be Published.
Page generated: Wed Jul 26 13:45:15 2023

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