Calcium in PDB 8uk3: The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 54;

Binding sites:

The binding sites of Calcium atom in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) (pdb code 8uk3). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 54 binding sites of Calcium where determined in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction), PDB code: 8uk3:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ f:Ca402 b:24.0 occ:1.00 OE1 f:GLU154 2.4 20.4 1.0 OD1 f:ASP151 2.4 21.7 1.0 OE1 f:GLU222 2.4 23.9 1.0 O f:LEU224 2.4 21.4 1.0 HD23 f:LEU150 3.2 20.5 1.0 HB3 f:GLU222 3.3 23.9 1.0 HA f:ASP151 3.3 21.7 1.0 CD f:GLU154 3.3 20.4 1.0 CD f:GLU222 3.5 23.9 1.0 CG f:ASP151 3.6 21.7 1.0 C f:LEU224 3.7 21.4 1.0 OE2 f:GLU154 3.7 20.4 1.0 HA f:VAL225 3.8 21.5 1.0 HG22 f:VAL225 3.8 21.5 1.0 H f:LEU224 3.9 21.4 1.0 HE3 d:LYS290 4.1 21.5 1.0 CB f:GLU222 4.1 23.9 1.0 CD2 f:LEU150 4.1 20.5 1.0 HG2 f:GLU222 4.1 23.9 1.0 CG f:GLU222 4.1 23.9 1.0 CA f:ASP151 4.1 21.7 1.0 HD21 f:LEU150 4.3 20.5 1.0 CB f:ASP151 4.3 21.7 1.0 HB3 f:LEU224 4.4 21.4 1.0 HB2 f:GLU154 4.4 20.4 1.0 HD22 f:LEU150 4.4 20.5 1.0 HB3 f:ASP151 4.5 21.7 1.0 OE2 f:GLU222 4.5 23.9 1.0 HG13 f:VAL225 4.5 21.5 1.0 CA f:VAL225 4.5 21.5 1.0 N f:VAL225 4.5 21.5 1.0 OD2 f:ASP151 4.5 21.7 1.0 HD2 d:LYS290 4.5 21.5 1.0 HB2 f:GLU222 4.6 23.9 1.0 N f:LEU224 4.6 21.4 1.0 CG f:GLU154 4.6 20.4 1.0 CA f:LEU224 4.6 21.4 1.0 N f:ASP151 4.6 21.7 1.0 HE2 d:LYS290 4.7 21.5 1.0 CG2 f:VAL225 4.7 21.5 1.0 H f:LYS223 4.8 23.1 1.0 CE d:LYS290 4.8 21.5 1.0 HG3 f:GLU154 4.9 20.4 1.0 O f:LEU150 4.9 20.5 1.0 CB f:GLU154 4.9 20.4 1.0 CB f:LEU224 5.0 21.4 1.0 C f:LEU150 5.0 20.5 1.0 H f:ASP151 5.0 21.7 1.0

Calcium binding site 2 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ f:Ca403 b:17.3 occ:1.00 OD1 f:ASP228 2.3 20.1 1.0 OD2 d:ASP301 2.4 17.6 1.0 OE1 f:GLN177 2.4 18.8 1.0 OD1 f:ASP231 2.4 18.8 1.0 OD2 f:ASP228 2.4 20.1 1.0 CG f:ASP228 2.6 20.1 1.0 O f:VAL229 3.0 19.4 1.0 CG f:ASP231 3.2 18.8 1.0 HA f:GLU180 3.3 17.8 1.0 OD2 f:ASP231 3.3 18.8 1.0 H f:VAL229 3.4 19.4 1.0 CG d:ASP301 3.5 17.6 1.0 CD f:GLN177 3.6 18.8 1.0 HB3 f:GLN177 3.9 18.8 1.0 HB2 f:GLN177 4.0 18.8 1.0 CB f:ASP228 4.0 20.1 1.0 N f:VAL229 4.0 19.4 1.0 HA f:ASP228 4.1 20.1 1.0 OD1 d:ASP301 4.1 17.6 1.0 O f:ASP179 4.1 18.4 1.0 O f:ASN182 4.1 18.7 1.0 HH d:TYR302 4.2 17.4 1.0 C f:VAL229 4.2 19.4 1.0 HZ3 f:LYS183 4.2 19.4 1.0 CA f:GLU180 4.2 17.8 1.0 CB f:GLN177 4.3 18.8 1.0 HE22 f:GLN177 4.4 18.8 1.0 HB2 f:ASP228 4.4 20.1 1.0 CA f:ASP228 4.5 20.1 1.0 NE2 f:GLN177 4.5 18.8 1.0 O f:GLU180 4.5 17.8 1.0 OH d:TYR302 4.5 17.4 1.0 HG2 f:LYS183 4.5 19.4 1.0 CG f:GLN177 4.6 18.8 1.0 C f:GLU180 4.6 17.8 1.0 HB3 f:ASP228 4.6 20.1 1.0 CB d:ASP301 4.6 17.6 1.0 HB2 d:ASP301 4.7 17.6 1.0 CB f:ASP231 4.7 18.8 1.0 C f:ASP228 4.7 20.1 1.0 HZ2 f:LYS183 4.7 19.4 1.0 H f:ASP231 4.8 18.8 1.0 HB3 d:ASP301 4.8 17.6 1.0 C f:ASP179 4.8 18.4 1.0 CA f:VAL229 4.8 19.4 1.0 N f:ASP231 4.9 18.8 1.0 NZ f:LYS183 4.9 19.4 1.0 HE2 d:TYR302 4.9 17.4 1.0 N f:GLU180 4.9 17.8 1.0 HA f:ASP231 4.9 18.8 1.0 HG22 f:VAL229 4.9 19.4 1.0 HB2 f:GLU180 5.0 17.8 1.0

Calcium binding site 3 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ f:Ca404 b:29.2 occ:1.00 OD2 d:ASP95 2.4 23.4 1.0 O f:THR214 2.4 26.5 1.0 O f:GLY206 2.5 24.2 1.0 C f:THR214 3.5 26.5 1.0 HB3 f:CYS207 3.6 24.8 1.0 CG d:ASP95 3.6 23.4 1.0 HB f:THR214 3.7 26.5 1.0 HA f:CYS207 3.7 24.8 1.0 OE2 f:GLU216 3.7 22.8 1.0 HA f:THR214 3.7 26.5 1.0 C f:GLY206 3.7 24.2 1.0 CA f:THR214 4.1 26.5 1.0 CD f:GLU216 4.1 22.8 1.0 HG3 f:GLU216 4.2 22.8 1.0 O f:PHE215 4.3 23.9 1.0 CA f:CYS207 4.3 24.8 1.0 CB f:THR214 4.4 26.5 1.0 OD1 d:ASP95 4.4 23.4 1.0 CB f:CYS207 4.4 24.8 1.0 HB2 d:ASP95 4.4 23.4 1.0 N f:CYS207 4.5 24.8 1.0 OE1 f:GLU216 4.5 22.8 1.0 C f:PHE215 4.6 23.9 1.0 N f:PHE215 4.6 23.9 1.0 CB d:ASP95 4.7 23.4 1.0 HA3 f:GLY206 4.7 24.2 1.0 HA f:PHE215 4.7 23.9 1.0 CG f:GLU216 4.7 22.8 1.0 CA f:GLY206 4.8 24.2 1.0 HG d:SER97 4.9 21.4 1.0 CA f:PHE215 4.9 23.9 1.0 HB2 f:CYS207 4.9 24.8 1.0

Calcium binding site 4 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ g:Ca402 b:30.0 occ:1.00 OE1 g:GLU222 2.4 30.5 1.0 OD1 g:ASP151 2.4 27.5 1.0 OE1 g:GLU154 2.4 26.3 1.0 O g:LEU224 2.4 26.9 1.0 HD23 g:LEU150 3.0 26.5 1.0 HA g:ASP151 3.1 27.5 1.0 HB3 g:GLU222 3.4 30.5 1.0 CD g:GLU154 3.5 26.3 1.0 CG g:ASP151 3.5 27.5 1.0 HA g:VAL225 3.6 28.3 1.0 CD g:GLU222 3.6 30.5 1.0 C g:LEU224 3.6 26.9 1.0 HD21 g:LEU150 3.7 26.5 1.0 CD2 g:LEU150 3.7 26.5 1.0 CA g:ASP151 3.9 27.5 1.0 HG22 g:VAL225 4.0 28.3 1.0 HD22 g:LEU150 4.0 26.5 1.0 H g:LEU224 4.0 26.9 1.0 OE2 g:GLU154 4.0 26.3 1.0 CB g:ASP151 4.1 27.5 1.0 HB2 g:GLU154 4.2 26.3 1.0 HB3 g:ASP151 4.2 27.5 1.0 CB g:GLU222 4.2 30.5 1.0 HG13 g:VAL225 4.3 28.3 1.0 CG g:GLU222 4.3 30.5 1.0 HG2 g:GLU222 4.3 30.5 1.0 HB3 g:LEU224 4.3 26.9 1.0 CA g:VAL225 4.3 28.3 1.0 N g:VAL225 4.4 28.3 1.0 N g:ASP151 4.5 27.5 1.0 OE2 g:GLU222 4.5 30.5 1.0 OD2 g:ASP151 4.5 27.5 1.0 CG g:GLU154 4.6 26.3 1.0 CA g:LEU224 4.6 26.9 1.0 N g:LEU224 4.7 26.9 1.0 O g:LEU150 4.7 26.5 1.0 HB2 g:GLU222 4.7 30.5 1.0 HG3 g:GLU154 4.8 26.3 1.0 CB g:GLU154 4.8 26.3 1.0 C g:LEU150 4.8 26.5 1.0 HD2 h:LYS290 4.8 28.8 1.0 CG2 g:VAL225 4.9 28.3 1.0 H g:ASP151 4.9 27.5 1.0 HB3 g:GLU154 4.9 26.3 1.0 HE3 h:LYS290 5.0 28.8 1.0 CB g:LEU224 5.0 26.9 1.0

Calcium binding site 5 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ g:Ca403 b:26.9 occ:1.00 OD2 h:ASP301 2.4 26.4 1.0 OD1 g:ASP228 2.4 28.5 1.0 OE1 g:GLN177 2.4 27.9 1.0 OD2 g:ASP228 2.4 28.5 1.0 OD1 g:ASP231 2.4 28.6 1.0 CG g:ASP228 2.6 28.5 1.0 O g:VAL229 2.8 28.6 1.0 CG g:ASP231 3.2 28.6 1.0 OD2 g:ASP231 3.2 28.6 1.0 CG h:ASP301 3.5 26.4 1.0 H g:VAL229 3.6 28.6 1.0 CD g:GLN177 3.6 27.9 1.0 HA g:ASP228 3.7 28.5 1.0 CB g:ASP228 3.9 28.5 1.0 N g:VAL229 3.9 28.6 1.0 C g:VAL229 4.0 28.6 1.0 HA g:GLU180 4.0 24.8 1.0 HZ3 g:LYS183 4.0 26.9 1.0 HB3 g:GLN177 4.1 27.9 1.0 HB2 g:GLN177 4.1 27.9 1.0 CA g:ASP228 4.1 28.5 1.0 O g:ASP179 4.2 26.5 1.0 HE22 g:GLN177 4.2 27.9 1.0 OD1 h:ASP301 4.2 26.4 1.0 C g:ASP228 4.3 28.5 1.0 HB2 g:ASP228 4.3 28.5 1.0 O g:ASN182 4.3 26.9 1.0 NE2 g:GLN177 4.4 27.9 1.0 HG2 g:LYS183 4.4 26.9 1.0 HH h:TYR302 4.4 24.1 1.0 CB g:GLN177 4.4 27.9 1.0 HB2 h:ASP301 4.5 26.4 1.0 CB h:ASP301 4.5 26.4 1.0 HB3 g:ASP228 4.5 28.5 1.0 HB3 h:ASP301 4.6 26.4 1.0 HZ2 g:LYS183 4.6 26.9 1.0 CG g:GLN177 4.6 27.9 1.0 CA g:VAL229 4.6 28.6 1.0 CB g:ASP231 4.7 28.6 1.0 OH h:TYR302 4.7 24.1 1.0 NZ g:LYS183 4.7 26.9 1.0 H g:ASP231 4.8 28.6 1.0 HE2 h:TYR302 4.8 24.1 1.0 N g:ASP231 4.8 28.6 1.0 HA g:VAL230 4.8 27.4 1.0 CA g:GLU180 4.9 24.8 1.0 HZ1 g:LYS183 5.0 26.9 1.0

Calcium binding site 6 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ g:Ca404 b:32.3 occ:1.00 OD2 h:ASP95 2.4 34.9 1.0 O g:THR214 2.4 37.4 1.0 O g:GLY206 2.5 35.1 1.0 OE2 g:GLU216 3.2 32.7 1.0 C g:THR214 3.5 37.4 1.0 CG h:ASP95 3.6 34.9 1.0 C g:GLY206 3.7 35.1 1.0 HB g:THR214 3.7 37.4 1.0 CD g:GLU216 3.8 32.7 1.0 HB3 g:CYS207 3.8 36.7 1.0 HA g:THR214 3.8 37.4 1.0 HG3 g:GLU216 4.0 32.7 1.0 HA g:CYS207 4.0 36.7 1.0 CA g:THR214 4.1 37.4 1.0 OE1 g:GLU216 4.2 32.7 1.0 OD1 h:ASP95 4.4 34.9 1.0 HB2 h:ASP95 4.4 34.9 1.0 O g:PHE215 4.4 34.5 1.0 CB g:THR214 4.4 37.4 1.0 HA3 g:GLY206 4.4 35.1 1.0 CG g:GLU216 4.5 32.7 1.0 CA g:CYS207 4.6 36.7 1.0 CB g:CYS207 4.6 36.7 1.0 N g:CYS207 4.6 36.7 1.0 C g:PHE215 4.6 34.5 1.0 CB h:ASP95 4.6 34.9 1.0 CA g:GLY206 4.6 35.1 1.0 N g:PHE215 4.7 34.5 1.0 HA g:PHE215 4.8 34.5 1.0 HA2 g:GLY206 4.8 35.1 1.0 CA g:PHE215 4.9 34.5 1.0 HZ2 h:TRP293 5.0 28.4 1.0

Calcium binding site 7 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ h:Ca402 b:22.8 occ:1.00 OD1 h:ASP151 2.4 26.0 1.0 OE1 h:GLU222 2.4 29.9 1.0 OE1 h:GLU154 2.4 24.9 1.0 O h:LEU224 2.4 26.3 1.0 HD23 h:LEU150 2.8 24.6 1.0 HA h:ASP151 3.1 26.0 1.0 HB3 h:GLU222 3.4 29.9 1.0 HD21 h:LEU150 3.4 24.6 1.0 CD2 h:LEU150 3.5 24.6 1.0 CD h:GLU154 3.5 24.9 1.0 CD h:GLU222 3.5 29.9 1.0 CG h:ASP151 3.6 26.0 1.0 C h:LEU224 3.6 26.3 1.0 HD22 h:LEU150 3.7 24.6 1.0 HA h:VAL225 3.7 27.6 1.0 H h:LEU224 3.9 26.3 1.0 CA h:ASP151 3.9 26.0 1.0 HG22 h:VAL225 4.0 27.6 1.0 HE3 i:LYS290 4.0 26.1 1.0 OE2 h:GLU154 4.0 24.9 1.0 CB h:ASP151 4.2 26.0 1.0 CB h:GLU222 4.2 29.9 1.0 CG h:GLU222 4.2 29.9 1.0 HG2 h:GLU222 4.2 29.9 1.0 HB3 h:LEU224 4.2 26.3 1.0 HB2 h:GLU154 4.3 24.9 1.0 HB3 h:ASP151 4.3 26.0 1.0 HE2 i:LYS290 4.4 26.1 1.0 N h:ASP151 4.4 26.0 1.0 CA h:VAL225 4.5 27.6 1.0 OE2 h:GLU222 4.5 29.9 1.0 HG13 h:VAL225 4.5 27.6 1.0 N h:VAL225 4.5 27.6 1.0 OD2 h:ASP151 4.5 26.0 1.0 N h:LEU224 4.6 26.3 1.0 CA h:LEU224 4.6 26.3 1.0 HD2 i:LYS290 4.6 26.1 1.0 CE i:LYS290 4.6 26.1 1.0 HB2 h:GLU222 4.7 29.9 1.0 CG h:GLU154 4.7 24.9 1.0 O h:LEU150 4.7 24.6 1.0 H h:ASP151 4.7 26.0 1.0 C h:LEU150 4.7 24.6 1.0 CG h:LEU150 4.8 24.6 1.0 HG3 h:GLU154 4.9 24.9 1.0 CB h:GLU154 4.9 24.9 1.0 CB h:LEU224 4.9 26.3 1.0 CG2 h:VAL225 4.9 27.6 1.0 HG h:LEU150 4.9 24.6 1.0

Calcium binding site 8 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ h:Ca403 b:24.4 occ:1.00 OD2 i:ASP301 2.4 22.0 1.0 OD1 h:ASP231 2.4 24.9 1.0 OD1 h:ASP228 2.4 25.5 1.0 OE1 h:GLN177 2.4 26.0 1.0 OD2 h:ASP228 2.4 25.5 1.0 OD2 h:ASP231 2.5 24.9 1.0 CG h:ASP228 2.7 25.5 1.0 CG h:ASP231 2.7 24.9 1.0 CG i:ASP301 3.4 22.0 1.0 O h:VAL229 3.5 25.3 1.0 HA h:GLU180 3.5 24.6 1.0 CD h:GLN177 3.6 26.0 1.0 O h:ASP179 3.9 25.1 1.0 OD1 i:ASP301 3.9 22.0 1.0 HB3 h:GLN177 4.0 26.0 1.0 HH i:TYR302 4.0 20.4 1.0 CB h:ASP228 4.1 25.5 1.0 HB2 h:GLN177 4.1 26.0 1.0 HZ3 h:LYS183 4.1 25.1 1.0 HA h:ASP228 4.1 25.5 1.0 CB h:ASP231 4.2 24.9 1.0 OE1 h:GLU180 4.2 24.6 1.0 OH i:TYR302 4.3 20.4 1.0 H h:VAL229 4.3 25.3 1.0 O h:ASN182 4.3 25.3 1.0 HE22 h:GLN177 4.4 26.0 1.0 CA h:GLU180 4.4 24.6 1.0 CB h:GLN177 4.4 26.0 1.0 NE2 h:GLN177 4.5 26.0 1.0 H h:ASP231 4.5 24.9 1.0 HB2 h:ASP228 4.5 25.5 1.0 CA h:ASP228 4.5 25.5 1.0 HB3 h:ASP231 4.5 24.9 1.0 HG2 h:LYS183 4.6 25.1 1.0 CG h:GLN177 4.6 26.0 1.0 N h:VAL229 4.6 25.3 1.0 C h:GLU180 4.6 24.6 1.0 O h:GLU180 4.6 24.6 1.0 C h:VAL229 4.6 25.3 1.0 CB i:ASP301 4.6 22.0 1.0 HZ1 h:LYS183 4.7 25.1 1.0 HB3 h:ASP228 4.7 25.5 1.0 HB2 h:ASP231 4.7 24.9 1.0 N h:ASP231 4.7 24.9 1.0 C h:ASP228 4.7 25.5 1.0 HB3 i:ASP301 4.7 22.0 1.0 C h:ASP179 4.8 25.1 1.0 NZ h:LYS183 4.8 25.1 1.0 HB2 i:ASP301 4.8 22.0 1.0 HA h:ASP231 4.8 24.9 1.0 CZ i:TYR302 4.9 20.4 1.0 CA h:ASP231 4.9 24.9 1.0 HE2 i:TYR302 4.9 20.4 1.0 HG3 h:GLN177 4.9 26.0 1.0 HZ2 h:LYS183 5.0 25.1 1.0

Calcium binding site 9 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ h:Ca404 b:28.9 occ:1.00 OE2 h:GLU216 2.4 29.2 1.0 OD2 i:ASP95 2.4 26.2 1.0 O h:THR214 2.4 33.0 1.0 O h:GLY206 2.5 28.5 1.0 CD h:GLU216 3.3 29.2 1.0 C h:THR214 3.6 33.0 1.0 CG i:ASP95 3.6 26.2 1.0 HB3 h:CYS207 3.7 32.7 1.0 C h:GLY206 3.7 28.5 1.0 HB h:THR214 3.8 33.0 1.0 HG3 h:GLU216 3.8 29.2 1.0 HA h:CYS207 3.9 32.7 1.0 HA h:THR214 4.0 33.0 1.0 OE1 h:GLU216 4.0 29.2 1.0 CG h:GLU216 4.1 29.2 1.0 CA h:THR214 4.2 33.0 1.0 OD1 i:ASP95 4.2 26.2 1.0 HA3 h:GLY206 4.4 28.5 1.0 HB2 i:ASP95 4.4 26.2 1.0 CA h:CYS207 4.4 32.7 1.0 O h:PHE215 4.5 30.5 1.0 CB h:CYS207 4.5 32.7 1.0 CB h:THR214 4.5 33.0 1.0 N h:CYS207 4.5 32.7 1.0 HA h:PHE215 4.6 30.5 1.0 HG2 h:GLU216 4.6 29.2 1.0 C h:PHE215 4.6 30.5 1.0 CA h:GLY206 4.6 28.5 1.0 CB i:ASP95 4.6 26.2 1.0 N h:PHE215 4.6 30.5 1.0 CA h:PHE215 4.9 30.5 1.0 HA2 h:GLY206 4.9 28.5 1.0

Calcium binding site 10 out of 54 in the The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ (Class 6 Reconstruction) within 5.0Å range: probe atom residue distance (Å) B Occ i:Ca401 b:23.0 occ:1.00 OD1 i:ASP231 2.3 23.6 1.0 OD1 i:ASP228 2.4 23.4 1.0 OD2 g:ASP301 2.4 21.6 1.0 OE1 i:GLN177 2.4 23.8 1.0 OD2 i:ASP228 2.4 23.4 1.0 OD2 i:ASP231 2.4 23.6 1.0 CG i:ASP228 2.6 23.4 1.0 CG i:ASP231 2.7 23.6 1.0 O i:VAL229 3.3 23.2 1.0 CG g:ASP301 3.5 21.6 1.0 CD i:GLN177 3.6 23.8 1.0 HB2 i:GLN177 3.7 23.8 1.0 HA i:GLU180 3.7 22.7 1.0 O i:ASN182 3.7 22.8 1.0 HB3 i:GLN177 3.7 23.8 1.0 H i:VAL229 3.8 23.2 1.0 O i:ASP179 4.0 23.5 1.0 HZ1 i:LYS183 4.0 22.9 1.0 CB i:ASP228 4.1 23.4 1.0 CB i:GLN177 4.1 23.8 1.0 HA i:ASP228 4.1 23.4 1.0 OD1 g:ASP301 4.1 21.6 1.0 HH g:TYR302 4.2 20.1 1.0 CB i:ASP231 4.2 23.6 1.0 N i:VAL229 4.3 23.2 1.0 CG i:GLN177 4.4 23.8 1.0 HG2 i:LYS183 4.4 22.9 1.0 H i:ASP231 4.5 23.6 1.0 HB2 i:ASP228 4.5 23.4 1.0 C i:VAL229 4.5 23.2 1.0 CA i:ASP228 4.5 23.4 1.0 NE2 i:GLN177 4.6 23.8 1.0 HE22 i:GLN177 4.6 23.8 1.0 CA i:GLU180 4.6 22.7 1.0 OH g:TYR302 4.6 20.1 1.0 HB3 i:ASP228 4.6 23.4 1.0 HB3 i:ASP231 4.6 23.6 1.0 HZ3 i:LYS183 4.6 22.9 1.0 HB2 i:ASP231 4.7 23.6 1.0 CB g:ASP301 4.7 21.6 1.0 HG3 i:GLN177 4.7 23.8 1.0 NZ i:LYS183 4.7 22.9 1.0 HB2 g:ASP301 4.7 21.6 1.0 C i:ASP228 4.7 23.4 1.0 N i:ASP231 4.7 23.6 1.0 HB3 g:ASP301 4.8 21.6 1.0 C i:ASP179 4.9 23.5 1.0 HA i:ASP231 4.9 23.6 1.0 CA i:ASP231 4.9 23.6 1.0 HZ2 i:LYS183 4.9 22.9 1.0 C i:ASN182 4.9 22.8 1.0

M.De Sautu, T.Herrmann, J.Simon, S.C.Harrison. The Rotavirus VP5*/VP8* Conformational Transition Permeabilizes Membranes to CA2+ To Be Published.