Calcium in PDB 8un7: Single Particle Analysis of Recombinant Human MFAP4

Calcium Binding Sites:

The binding sites of Calcium atom in the Single Particle Analysis of Recombinant Human MFAP4 (pdb code 8un7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Single Particle Analysis of Recombinant Human MFAP4, PDB code: 8un7:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 8un7

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Calcium binding site 1 out of 8 in the Single Particle Analysis of Recombinant Human MFAP4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Single Particle Analysis of Recombinant Human MFAP4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:89.7
occ:1.00
 CB A:ASP191 1.9 72.7 1.0
OG A:SER186 2.4 50.9 1.0
OE1 A:GLN192 2.6 66.2 1.0
CG A:ASP191 2.7 77.8 1.0
O A:THR187 2.8 43.7 1.0
OD1 A:ASP191 3.0 82.4 1.0
CA A:ASP191 3.2 72.6 1.0
N A:ASP191 3.4 71.9 1.0
N A:GLN192 3.4 66.4 1.0
OD2 A:ASP191 3.6 73.3 1.0
CD A:GLN192 3.8 65.9 1.0
CB A:SER186 3.8 41.1 1.0
C A:ASP191 3.8 74.1 1.0
CE1 A:PHE195 3.9 66.6 1.0
C A:THR187 3.9 45.5 1.0
N A:THR187 4.0 44.9 1.0
CD1 A:PHE195 4.2 67.1 1.0
CG A:GLN192 4.5 67.9 1.0
CZ A:PHE195 4.6 68.8 1.0
CA A:SER186 4.6 30.9 1.0
C A:ARG190 4.6 62.5 1.0
CA A:THR187 4.6 40.1 1.0
CA A:GLN192 4.6 64.4 1.0
C A:SER186 4.7 39.6 1.0
NE2 A:GLN192 4.8 61.3 1.0
CB A:ARG190 4.9 54.2 1.0
CB A:SER203 4.9 61.0 1.0
N A:PHE188 5.0 46.5 1.0

Calcium binding site 2 out of 8 in 8un7

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Calcium binding site 2 out of 8 in the Single Particle Analysis of Recombinant Human MFAP4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Single Particle Analysis of Recombinant Human MFAP4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca303

b:85.1
occ:1.00
 NE2 D:GLN192 1.6 72.7 1.0
N D:GLN192 2.4 76.7 1.0
CD D:GLN192 2.5 71.0 1.0
OG D:SER186 2.7 55.2 1.0
CB D:ASP191 2.8 70.8 1.0
O D:THR187 2.9 63.6 1.0
OE1 D:GLN192 3.0 71.1 1.0
OD1 D:ASP191 3.1 77.8 1.0
CG D:ASP191 3.1 75.5 1.0
CA D:GLN192 3.2 69.4 1.0
CE1 D:PHE195 3.3 74.2 1.0
C D:ASP191 3.4 79.2 1.0
CD1 D:PHE195 3.4 74.7 1.0
CA D:ASP191 3.5 74.7 1.0
CG D:GLN192 3.6 71.8 1.0
N D:ASP191 3.7 74.9 1.0
CB D:GLN192 4.0 68.9 1.0
OD2 D:ASP191 4.1 79.7 1.0
CB D:SER186 4.1 49.4 1.0
C D:THR187 4.2 59.4 1.0
N D:THR187 4.4 59.7 1.0
C D:GLN192 4.5 69.4 1.0
O D:ASP191 4.6 79.0 1.0
CZ D:PHE195 4.7 75.7 1.0
CG D:PHE195 4.8 74.4 1.0
CB D:SER203 4.8 62.9 1.0
N D:ASP193 4.8 77.7 1.0
C D:ARG190 5.0 65.5 1.0

Calcium binding site 3 out of 8 in 8un7

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Calcium binding site 3 out of 8 in the Single Particle Analysis of Recombinant Human MFAP4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Single Particle Analysis of Recombinant Human MFAP4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca303

b:89.7
occ:1.00
 CB B:ASP191 1.9 72.7 1.0
OG B:SER186 2.4 50.9 1.0
OE1 B:GLN192 2.6 66.2 1.0
CG B:ASP191 2.7 77.8 1.0
O B:THR187 2.8 43.7 1.0
OD1 B:ASP191 3.0 82.4 1.0
CA B:ASP191 3.2 72.6 1.0
N B:ASP191 3.4 71.9 1.0
N B:GLN192 3.4 66.4 1.0
OD2 B:ASP191 3.6 73.3 1.0
CD B:GLN192 3.8 65.9 1.0
CB B:SER186 3.8 41.1 1.0
C B:ASP191 3.8 74.1 1.0
CE1 B:PHE195 3.9 66.6 1.0
C B:THR187 3.9 45.5 1.0
N B:THR187 4.0 44.9 1.0
CD1 B:PHE195 4.2 67.1 1.0
CG B:GLN192 4.5 67.9 1.0
CZ B:PHE195 4.6 68.8 1.0
CA B:SER186 4.6 30.9 1.0
C B:ARG190 4.6 62.5 1.0
CA B:THR187 4.6 40.1 1.0
CA B:GLN192 4.6 64.4 1.0
C B:SER186 4.7 39.6 1.0
NE2 B:GLN192 4.8 61.3 1.0
CB B:ARG190 4.9 54.2 1.0
CB B:SER203 4.9 61.0 1.0
N B:PHE188 5.0 46.5 1.0

Calcium binding site 4 out of 8 in 8un7

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Calcium binding site 4 out of 8 in the Single Particle Analysis of Recombinant Human MFAP4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Single Particle Analysis of Recombinant Human MFAP4 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca303

b:85.1
occ:1.00
 NE2 E:GLN192 1.6 72.7 1.0
N E:GLN192 2.4 76.7 1.0
CD E:GLN192 2.5 71.0 1.0
OG E:SER186 2.7 55.2 1.0
CB E:ASP191 2.8 70.8 1.0
O E:THR187 2.9 63.6 1.0
OE1 E:GLN192 3.0 71.1 1.0
OD1 E:ASP191 3.1 77.8 1.0
CG E:ASP191 3.1 75.5 1.0
CA E:GLN192 3.2 69.4 1.0
CE1 E:PHE195 3.3 74.2 1.0
C E:ASP191 3.4 79.2 1.0
CD1 E:PHE195 3.4 74.7 1.0
CA E:ASP191 3.5 74.7 1.0
CG E:GLN192 3.6 71.8 1.0
N E:ASP191 3.7 74.9 1.0
CB E:GLN192 4.0 68.9 1.0
OD2 E:ASP191 4.1 79.7 1.0
CB E:SER186 4.1 49.4 1.0
C E:THR187 4.2 59.4 1.0
N E:THR187 4.4 59.7 1.0
C E:GLN192 4.5 69.4 1.0
O E:ASP191 4.6 79.0 1.0
CZ E:PHE195 4.7 75.7 1.0
CG E:PHE195 4.8 74.4 1.0
CB E:SER203 4.8 62.9 1.0
N E:ASP193 4.8 77.7 1.0
C E:ARG190 5.0 65.5 1.0

Calcium binding site 5 out of 8 in 8un7

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Calcium binding site 5 out of 8 in the Single Particle Analysis of Recombinant Human MFAP4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Single Particle Analysis of Recombinant Human MFAP4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca303

b:89.7
occ:1.00
 CB C:ASP191 1.9 72.7 1.0
OG C:SER186 2.4 50.9 1.0
OE1 C:GLN192 2.6 66.2 1.0
CG C:ASP191 2.7 77.8 1.0
O C:THR187 2.8 43.7 1.0
OD1 C:ASP191 3.0 82.4 1.0
CA C:ASP191 3.2 72.6 1.0
N C:ASP191 3.4 71.9 1.0
N C:GLN192 3.4 66.4 1.0
OD2 C:ASP191 3.6 73.3 1.0
CD C:GLN192 3.8 65.9 1.0
CB C:SER186 3.8 41.1 1.0
C C:ASP191 3.8 74.1 1.0
CE1 C:PHE195 3.9 66.6 1.0
C C:THR187 3.9 45.5 1.0
N C:THR187 4.0 44.9 1.0
CD1 C:PHE195 4.2 67.1 1.0
CG C:GLN192 4.5 67.9 1.0
CZ C:PHE195 4.6 68.8 1.0
CA C:SER186 4.6 30.9 1.0
C C:ARG190 4.6 62.5 1.0
CA C:THR187 4.6 40.1 1.0
CA C:GLN192 4.6 64.4 1.0
C C:SER186 4.7 39.6 1.0
NE2 C:GLN192 4.8 61.3 1.0
CB C:ARG190 4.9 54.2 1.0
CB C:SER203 4.9 61.0 1.0
N C:PHE188 5.0 46.5 1.0

Calcium binding site 6 out of 8 in 8un7

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Calcium binding site 6 out of 8 in the Single Particle Analysis of Recombinant Human MFAP4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Single Particle Analysis of Recombinant Human MFAP4 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca303

b:85.1
occ:1.00
 NE2 F:GLN192 1.6 72.7 1.0
N F:GLN192 2.4 76.7 1.0
CD F:GLN192 2.5 71.0 1.0
OG F:SER186 2.7 55.2 1.0
CB F:ASP191 2.8 70.8 1.0
O F:THR187 2.9 63.6 1.0
OE1 F:GLN192 3.0 71.1 1.0
OD1 F:ASP191 3.1 77.8 1.0
CG F:ASP191 3.1 75.5 1.0
CA F:GLN192 3.2 69.4 1.0
CE1 F:PHE195 3.3 74.2 1.0
C F:ASP191 3.4 79.2 1.0
CD1 F:PHE195 3.4 74.7 1.0
CA F:ASP191 3.5 74.7 1.0
CG F:GLN192 3.6 71.8 1.0
N F:ASP191 3.7 74.9 1.0
CB F:GLN192 4.0 68.9 1.0
OD2 F:ASP191 4.1 79.7 1.0
CB F:SER186 4.1 49.4 1.0
C F:THR187 4.2 59.4 1.0
N F:THR187 4.4 59.7 1.0
C F:GLN192 4.5 69.4 1.0
O F:ASP191 4.6 79.0 1.0
CZ F:PHE195 4.7 75.7 1.0
CG F:PHE195 4.8 74.4 1.0
CB F:SER203 4.8 62.9 1.0
N F:ASP193 4.8 77.7 1.0
C F:ARG190 5.0 65.5 1.0

Calcium binding site 7 out of 8 in 8un7

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Calcium binding site 7 out of 8 in the Single Particle Analysis of Recombinant Human MFAP4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Single Particle Analysis of Recombinant Human MFAP4 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca303

b:89.7
occ:1.00
 CB G:ASP191 1.9 72.7 1.0
OG G:SER186 2.4 50.9 1.0
OE1 G:GLN192 2.6 66.2 1.0
CG G:ASP191 2.7 77.8 1.0
O G:THR187 2.8 43.7 1.0
OD1 G:ASP191 3.0 82.4 1.0
CA G:ASP191 3.2 72.6 1.0
N G:ASP191 3.4 71.9 1.0
N G:GLN192 3.4 66.4 1.0
OD2 G:ASP191 3.6 73.3 1.0
CD G:GLN192 3.8 65.9 1.0
CB G:SER186 3.8 41.1 1.0
C G:ASP191 3.8 74.1 1.0
CE1 G:PHE195 3.9 66.6 1.0
C G:THR187 3.9 45.5 1.0
N G:THR187 4.0 44.9 1.0
CD1 G:PHE195 4.2 67.1 1.0
CG G:GLN192 4.5 67.9 1.0
CZ G:PHE195 4.6 68.8 1.0
CA G:SER186 4.6 30.9 1.0
C G:ARG190 4.6 62.5 1.0
CA G:THR187 4.6 40.1 1.0
CA G:GLN192 4.6 64.4 1.0
C G:SER186 4.7 39.6 1.0
NE2 G:GLN192 4.8 61.3 1.0
CB G:ARG190 4.9 54.2 1.0
CB G:SER203 4.9 61.0 1.0
N G:PHE188 5.0 46.5 1.0

Calcium binding site 8 out of 8 in 8un7

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Calcium binding site 8 out of 8 in the Single Particle Analysis of Recombinant Human MFAP4


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Single Particle Analysis of Recombinant Human MFAP4 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca303

b:85.1
occ:1.00
 NE2 H:GLN192 1.6 72.7 1.0
N H:GLN192 2.4 76.7 1.0
CD H:GLN192 2.5 71.0 1.0
OG H:SER186 2.7 55.2 1.0
CB H:ASP191 2.8 70.8 1.0
O H:THR187 2.9 63.6 1.0
OE1 H:GLN192 3.0 71.1 1.0
OD1 H:ASP191 3.1 77.8 1.0
CG H:ASP191 3.1 75.5 1.0
CA H:GLN192 3.2 69.4 1.0
CE1 H:PHE195 3.3 74.2 1.0
C H:ASP191 3.4 79.2 1.0
CD1 H:PHE195 3.4 74.7 1.0
CA H:ASP191 3.5 74.7 1.0
CG H:GLN192 3.6 71.8 1.0
N H:ASP191 3.7 74.9 1.0
CB H:GLN192 4.0 68.9 1.0
OD2 H:ASP191 4.1 79.7 1.0
CB H:SER186 4.1 49.4 1.0
C H:THR187 4.2 59.4 1.0
N H:THR187 4.4 59.7 1.0
C H:GLN192 4.5 69.4 1.0
O H:ASP191 4.6 79.0 1.0
CZ H:PHE195 4.7 75.7 1.0
CG H:PHE195 4.8 74.4 1.0
CB H:SER203 4.8 62.9 1.0
N H:ASP193 4.8 77.7 1.0
C H:ARG190 5.0 65.5 1.0

Reference:

M.R.Wozny, V.Nelea, I.F.S.Siddiqui, S.Wanga, V.De Waard, M.Strauss, D.P.Reinhardt. Microfibril-Associated Glycoprotein 4 Forms Octamers That Mediate Interactions with Elastogenic Proteins and Cells. Nat Commun V. 15 4015 2024.
ISSN: ESSN 2041-1723
PubMed: 38740766
DOI: 10.1038/S41467-024-48377-Z
Page generated: Fri Jul 19 12:12:05 2024

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