Calcium in PDB 8upi: Structure of A Periplasmic Peptide Binding Protein From Mesorhizobium Sp. AP09 Bound to Aminoserine

The structure of Structure of A Periplasmic Peptide Binding Protein From Mesorhizobium Sp. AP09 Bound to Aminoserine, PDB code: 8upi was solved by R.L.Frkic, O.B.Smith, M.Rahman, J.A.Kaczmarski, C.J.Jackson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.51 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.247, 58.92, 139.355, 90, 90, 90
R / Rfree (%)	17.9 / 22.9

The binding sites of Calcium atom in the Structure of A Periplasmic Peptide Binding Protein From Mesorhizobium Sp. AP09 Bound to Aminoserine (pdb code 8upi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of A Periplasmic Peptide Binding Protein From Mesorhizobium Sp. AP09 Bound to Aminoserine, PDB code: 8upi:

Calcium binding site 1 out of 1 in the Structure of A Periplasmic Peptide Binding Protein From Mesorhizobium Sp. AP09 Bound to Aminoserine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Periplasmic Peptide Binding Protein From Mesorhizobium Sp. AP09 Bound to Aminoserine within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:8.4 occ:0.82 O A:LYS41 2.3 8.3 1.0 O A:PHE44 2.4 8.9 1.0 O A:HOH1096 2.4 11.6 1.0 OD1 A:ASP45 2.4 20.1 1.0 O A:HOH832 2.4 17.3 1.0 O A:HOH780 2.5 17.1 1.0 O A:HOH801 2.5 9.8 1.0 CG A:ASP45 3.4 12.2 1.0 C A:PHE44 3.5 6.4 1.0 C A:LYS41 3.5 11.3 1.0 CA A:ASP45 3.9 8.3 1.0 OD2 A:ASP515 4.1 14.4 1.0 OH A:TYR207 4.1 16.6 1.0 CB A:ASP45 4.1 9.5 1.0 N A:ASP45 4.1 6.8 1.0 OD2 A:ASP45 4.3 8.1 1.0 CA A:LYS41 4.4 10.1 1.0 CA A:SER42 4.5 10.0 1.0 N A:SER42 4.5 8.9 1.0 OD2 A:ASP49 4.5 19.4 1.0 OD2 A:ASP60 4.5 11.6 1.0 O A:HOH887 4.5 10.7 1.0 O A:HOH766 4.7 22.5 1.0 N A:PHE44 4.7 8.8 1.0 CA A:PHE44 4.7 8.9 1.0 C A:SER42 4.7 9.1 1.0 NE2 A:HIS164 4.8 9.7 1.0 CA A:GLY186 4.8 6.7 1.0 CB A:LYS41 4.8 9.9 1.0 O A:SER42 4.9 15.5 1.0 CE1 A:HIS509 4.9 15.7 1.0

R.L.Frkic, O.B.Smith, M.Rahman, J.A.Kaczmarski, C.J.Jackson. Structure of A Periplasmic Peptide Binding Protein From Mesorhizobium Sp. AP09 Bound to Aminoserine To Be Published.