Calcium in PDB 8uux: Murine Norovirus Capsid Protein in the Presence of 1MM Calcium

The binding sites of Calcium atom in the Murine Norovirus Capsid Protein in the Presence of 1MM Calcium (pdb code 8uux). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Murine Norovirus Capsid Protein in the Presence of 1MM Calcium, PDB code: 8uux:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Murine Norovirus Capsid Protein in the Presence of 1MM Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Murine Norovirus Capsid Protein in the Presence of 1MM Calcium within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca601 b:61.5 occ:1.00 O A:HOH722 2.4 39.8 1.0 OD2 A:ASP440 2.4 45.5 1.0 NE2 A:GLN438 2.9 39.3 1.0 OE1 A:GLN438 2.9 43.3 1.0 CD A:GLN438 3.3 43.0 1.0 O A:ALA445 3.6 42.3 1.0 CG A:ASP440 3.6 44.8 1.0 OE1 A:GLU447 4.0 43.3 1.0 CB A:ASP440 4.1 40.3 1.0 O A:ASP443 4.5 46.9 1.0 C A:ALA445 4.6 42.0 1.0 OD1 A:ASP440 4.6 47.0 1.0 O A:HOH777 4.7 39.6 1.0 CB A:ASP443 4.8 41.8 1.0 CG A:GLN438 4.8 37.9 1.0 N A:ALA445 4.9 43.4 1.0

Calcium binding site 2 out of 3 in the Murine Norovirus Capsid Protein in the Presence of 1MM Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Murine Norovirus Capsid Protein in the Presence of 1MM Calcium within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:54.0 occ:1.00 O B:HOH790 2.4 30.4 1.0 OE1 B:GLN438 2.4 33.4 1.0 O B:HOH807 2.7 38.8 1.0 OD2 B:ASP440 3.1 35.8 1.0 O B:HOH739 3.4 25.6 1.0 CD B:GLN438 3.4 32.4 1.0 CG B:ASP440 3.8 34.8 1.0 NE2 B:GLN438 3.8 29.9 1.0 O B:HOH706 3.9 33.0 1.0 OE2 B:GLU447 4.0 39.7 1.0 OD1 B:ASP440 4.1 35.1 1.0 CD B:GLU447 4.3 33.6 1.0 OE1 B:GLU447 4.4 32.8 1.0 O B:HOH728 4.5 35.4 1.0 CB B:ASP440 4.7 28.7 1.0 O B:ALA445 4.7 28.0 1.0 CG B:GLN438 4.8 27.4 1.0 CB B:GLU447 4.9 26.5 1.0

Calcium binding site 3 out of 3 in the Murine Norovirus Capsid Protein in the Presence of 1MM Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Murine Norovirus Capsid Protein in the Presence of 1MM Calcium within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca601 b:117.6 occ:1.00 O C:HOH718 2.4 109.9 1.0 O C:HOH777 2.9 105.7 1.0 NE2 C:GLN438 3.3 96.9 1.0 OD2 C:ASP440 3.5 115.0 1.0 OD2 C:ASP443 3.7 121.5 1.0 CB C:ASP443 4.0 118.8 1.0 CG C:ASP443 4.2 121.6 1.0 OE2 C:GLU447 4.4 92.8 1.0 CD C:GLN438 4.4 97.4 1.0 CG C:ASP440 4.8 113.5 1.0 OE1 C:GLN438 4.8 97.3 1.0

M.Sherman, F.Cox, M.Habib, S.Karst, C.E.Wobus, T.J.Smith. The Reversible Activation of Norovirus By Metal Ions. J.Virol. 2024.
ISSN: ESSN 1098-5514