Calcium in PDB 8v8d: ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2

The structure of ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2 also contains other interesting chemical elements:

Chlorine

(Cl)

10 atoms

The binding sites of Calcium atom in the ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2 (pdb code 8v8d). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2, PDB code: 8v8d:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca602 b:64.7 occ:1.00 O B:VAL42 2.5 70.8 1.0 OE1 B:GLU44 2.8 75.4 1.0 OE2 B:GLU44 3.2 75.4 1.0 OE2 B:GLU172 3.2 73.3 1.0 HH12 B:ARG205 3.3 74.1 1.0 CD B:GLU44 3.3 75.4 1.0 HB B:VAL42 3.4 70.8 1.0 HE1 B:TRP173 3.6 64.3 1.0 C B:VAL42 3.6 70.8 1.0 H B:VAL42 3.7 70.8 1.0 OE1 B:GLU172 3.7 73.3 1.0 HZ2 B:TRP173 3.7 64.3 1.0 CD B:GLU172 3.8 73.3 1.0 HH B:TYR210 4.0 80.2 1.0 NH1 B:ARG205 4.1 74.1 1.0 H B:GLU44 4.2 75.4 1.0 HA B:ASP43 4.2 74.0 1.0 CB B:VAL42 4.3 70.8 1.0 CA B:VAL42 4.3 70.8 1.0 N B:VAL42 4.3 70.8 1.0 HH11 B:ARG205 4.4 74.1 1.0 NE1 B:TRP173 4.5 64.3 1.0 HH22 B:ARG205 4.6 74.1 1.0 OD1 B:ASP41 4.6 71.2 1.0 N B:ASP43 4.6 74.0 1.0 CG B:GLU44 4.6 75.4 1.0 CZ2 B:TRP173 4.7 64.3 1.0 HG3 B:GLU44 4.7 75.4 1.0 CA B:ASP43 4.8 74.0 1.0 OH B:TYR210 4.9 80.2 1.0 N B:GLU44 4.9 75.4 1.0 HG12 B:VAL42 4.9 70.8 1.0 HG23 B:VAL42 5.0 70.8 1.0

Calcium binding site 2 out of 3 in the ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca602 b:80.2 occ:1.00 OE2 C:GLU172 2.9 75.0 1.0 OH C:TYR210 3.1 78.4 1.0 HH C:TYR210 3.4 78.4 1.0 OE1 C:GLU172 3.5 75.0 1.0 CD C:GLU172 3.6 75.0 1.0 HB3 B:ALA262 3.9 81.1 1.0 HE1 C:TYR210 4.0 78.4 1.0 CZ C:TYR210 4.0 78.4 1.0 HH12 C:ARG205 4.1 70.6 1.0 HH11 C:ARG205 4.2 70.6 1.0 HG23 C:ILE259 4.2 80.9 1.0 HE2 C:TYR209 4.2 80.1 1.0 HB2 B:ALA262 4.2 81.1 1.0 HB1 B:ALA262 4.3 81.1 1.0 CB B:ALA262 4.3 81.1 1.0 CE1 C:TYR210 4.4 78.4 1.0 NH1 C:ARG205 4.5 70.6 1.0 HG21 C:ILE259 4.7 80.9 1.0 HH C:TYR209 4.9 80.1 1.0 CG2 C:ILE259 5.0 80.9 1.0 HG12 C:ILE259 5.0 80.9 1.0 HE1 C:TRP173 5.0 70.5 1.0

Calcium binding site 3 out of 3 in the ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2 within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca602 b:81.2 occ:1.00 OE2 D:GLU44 2.7 74.5 1.0 OE1 D:GLU44 2.8 74.5 1.0 CD D:GLU44 3.0 74.5 1.0 HH D:TYR210 3.2 81.0 1.0 O D:VAL42 3.4 65.3 1.0 HG23 D:ILE259 3.4 82.3 1.0 OH D:TYR210 3.8 81.0 1.0 HH12 D:ARG205 3.8 72.3 1.0 H D:GLU44 3.8 74.5 1.0 HA D:ASP43 3.9 69.1 1.0 CG2 D:ILE259 4.3 82.3 1.0 OE2 D:GLU172 4.4 69.5 1.0 CG D:GLU44 4.4 74.5 1.0 HG22 D:ILE259 4.4 82.3 1.0 HG13 D:VAL42 4.4 65.3 1.0 HG21 D:ILE259 4.5 82.3 1.0 HG2 D:GLU44 4.5 74.5 1.0 NH1 D:ARG205 4.5 72.3 1.0 C D:VAL42 4.6 65.3 1.0 N D:GLU44 4.7 74.5 1.0 OD1 D:ASP41 4.7 64.7 1.0 HH11 D:ARG205 4.8 72.3 1.0 CA D:ASP43 4.8 69.1 1.0 OE1 D:GLU172 4.9 69.5 1.0 HH22 D:ARG205 4.9 72.3 1.0 HE2 D:TYR210 5.0 81.0 1.0

S.M.Burke, M.Avstrikova, C.M.Noviello, N.Mukhtasimova, J.P.Changeux, G.A.Thakur, S.M.Sine, M.Cecchini, R.E.Hibbs. ALPHA7-Nicotinic Acetylcholine Receptor Time Resolved Bound to Epibatidine and Pnu-120596 Asymmetric State 2 To Be Published.