Calcium in PDB 8viz: Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin

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>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Calcium atom in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin (pdb code 8viz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin, PDB code: 8viz:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:103.6 occ:1.00 O3B A:ADP401 2.4 110.6 1.0 O2A A:ADP401 3.2 110.1 1.0 PB A:ADP401 3.7 116.3 1.0 O1B A:ADP401 4.0 114.5 1.0 OE1 A:GLN137 4.0 113.9 1.0 CA A:GLY156 4.2 101.9 1.0 NE2 A:GLN137 4.3 110.0 1.0 PA A:ADP401 4.3 111.7 1.0 CD A:GLN137 4.3 110.1 1.0 OD1 A:ASP154 4.4 111.2 1.0 O3A A:ADP401 4.4 113.2 1.0 OD2 A:ASP11 4.5 132.2 1.0 CA A:GLY13 4.5 122.7 1.0 OD2 A:ASP154 4.8 114.2 1.0 NZ A:LYS18 4.8 112.5 1.0 N A:GLY156 4.8 102.7 1.0 O2B A:ADP401 4.9 117.7 1.0 CG A:ASP154 5.0 109.0 1.0

Calcium binding site 2 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca402 b:100.8 occ:1.00 O3B B:ADP401 2.4 101.6 1.0 O2A B:ADP401 3.7 94.3 1.0 PB B:ADP401 3.7 104.1 1.0 OE1 B:GLN137 3.8 102.1 1.0 OD2 B:ASP154 4.1 99.0 1.0 O1B B:ADP401 4.1 99.1 1.0 CD B:GLN137 4.2 97.9 1.0 OD1 B:ASP154 4.3 100.9 1.0 NE2 B:GLN137 4.4 97.2 1.0 CA B:GLY156 4.4 88.5 1.0 OD2 B:ASP11 4.5 124.0 1.0 CG B:ASP154 4.6 95.2 1.0 O3A B:ADP401 4.6 106.7 1.0 CG2 B:VAL339 4.7 85.5 1.0 PA B:ADP401 4.7 100.4 1.0 OD1 B:ASP11 4.7 125.9 1.0 O2B B:ADP401 4.8 102.3 1.0 N B:GLY156 5.0 87.8 1.0

Calcium binding site 3 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca402 b:114.3 occ:1.00 O3B C:ADP401 2.4 92.7 1.0 O2A C:ADP401 2.8 89.3 1.0 PB C:ADP401 3.6 95.0 1.0 O1B C:ADP401 3.9 92.9 1.0 PA C:ADP401 4.0 85.1 1.0 CA C:GLY156 4.2 82.9 1.0 O3A C:ADP401 4.2 96.9 1.0 OD2 C:ASP154 4.2 87.7 1.0 OE1 C:GLN137 4.3 91.0 1.0 OD2 C:ASP11 4.5 113.5 1.0 NZ C:LYS18 4.5 82.7 1.0 O1A C:ADP401 4.6 94.1 1.0 OD1 C:ASP154 4.8 90.1 1.0 N C:GLY156 4.8 82.0 1.0 NE2 C:GLN137 4.8 87.1 1.0 CD C:GLN137 4.9 85.8 1.0 O2B C:ADP401 4.9 104.1 1.0 CG C:ASP154 4.9 87.7 1.0 CG2 C:VAL339 4.9 68.2 1.0 CA C:GLY301 5.0 78.3 1.0

Calcium binding site 4 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca402 b:93.3 occ:1.00 O3B D:ADP401 2.5 89.9 1.0 O2A D:ADP401 3.4 83.8 1.0 PB D:ADP401 3.7 86.7 1.0 OE1 D:GLN137 3.7 92.9 1.0 O1B D:ADP401 3.8 81.5 1.0 NE2 D:GLN137 3.9 88.2 1.0 OD1 D:ASP154 4.0 90.6 1.0 CD D:GLN137 4.0 88.8 1.0 CA D:GLY156 4.3 81.4 1.0 OD2 D:ASP11 4.4 113.0 1.0 PA D:ADP401 4.5 84.5 1.0 O3A D:ADP401 4.5 90.8 1.0 OD1 D:ASP11 4.7 102.5 1.0 NZ D:LYS18 4.8 73.2 1.0 CG2 D:VAL339 4.8 69.4 1.0 O2B D:ADP401 4.8 92.0 1.0 CA D:GLY13 4.8 94.2 1.0 N D:GLY156 4.9 83.8 1.0 CG D:ASP154 4.9 92.8 1.0

Calcium binding site 5 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca402 b:94.0 occ:1.00 O3B E:ADP401 2.4 93.9 1.0 O2A E:ADP401 3.4 93.5 1.0 PB E:ADP401 3.7 97.9 1.0 OE1 E:GLN137 3.8 105.2 1.0 O1B E:ADP401 4.0 87.0 1.0 OD1 E:ASP154 4.2 110.8 1.0 CD E:GLN137 4.3 104.5 1.0 NE2 E:GLN137 4.3 101.2 1.0 OD2 E:ASP11 4.5 112.0 1.0 O3A E:ADP401 4.5 97.0 1.0 PA E:ADP401 4.5 98.4 1.0 NZ E:LYS18 4.6 78.5 1.0 CA E:GLY13 4.6 101.1 1.0 CA E:GLY156 4.8 85.7 1.0 OD1 E:ASP11 4.8 112.8 1.0 O2B E:ADP401 4.9 103.6 1.0

Calcium binding site 6 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca402 b:92.1 occ:1.00 O2G F:ATP401 2.4 107.3 1.0 O1B F:ATP401 2.4 95.9 1.0 OE1 F:GLN137 3.2 122.3 1.0 PB F:ATP401 3.6 94.2 1.0 PG F:ATP401 3.6 106.7 1.0 O3B F:ATP401 3.8 97.8 1.0 CD F:GLN137 3.9 114.2 1.0 O3G F:ATP401 4.0 100.2 1.0 OD2 F:ASP11 4.1 111.1 1.0 O3A F:ATP401 4.2 98.6 1.0 OD1 F:ASP11 4.4 115.2 1.0 O1A F:ATP401 4.5 105.4 1.0 OD1 F:ASP154 4.5 124.8 1.0 OD2 F:ASP154 4.5 123.5 1.0 NE2 F:GLN137 4.5 111.1 1.0 CG F:GLN137 4.7 113.2 1.0 CG F:ASP11 4.7 109.4 1.0 CA F:GLY13 4.7 99.5 1.0 NZ F:LYS18 4.8 90.7 1.0 PA F:ATP401 4.8 102.0 1.0 O1G F:ATP401 4.9 107.2 1.0 O2B F:ATP401 4.9 103.5 1.0 CG2 F:VAL339 4.9 80.9 1.0 CG F:ASP154 4.9 123.9 1.0

Calcium binding site 7 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca801 b:121.9 occ:1.00 O G:GLY65 2.4 134.6 1.0 O G:VAL145 2.4 123.5 1.0 OE2 G:GLU97 2.4 118.9 1.0 OE1 G:GLU97 2.8 122.7 1.0 CD G:GLU97 2.9 119.9 1.0 OD1 G:ASP66 3.0 131.2 1.0 C G:GLY65 3.6 132.6 1.0 C G:VAL145 3.7 121.7 1.0 CG G:ASP66 4.2 130.7 1.0 N G:VAL145 4.3 122.1 1.0 CG G:GLU97 4.4 115.1 1.0 N G:ASP66 4.4 124.8 1.0 CA G:ASP66 4.4 121.8 1.0 C G:ALA146 4.5 126.3 1.0 CA G:GLY65 4.5 131.5 1.0 CA G:ALA146 4.5 123.4 1.0 N G:ALA146 4.5 123.9 1.0 CA G:VAL145 4.6 119.0 1.0 N G:SER147 4.6 118.1 1.0 C G:GLY144 4.7 131.5 1.0 CG1 G:VAL145 4.7 121.6 1.0 OG G:SER94 4.8 119.2 1.0 O G:ALA146 4.9 126.8 1.0 CA G:CYS93 4.9 131.0 1.0 N G:SER94 4.9 123.5 1.0 CA G:GLY144 5.0 129.1 1.0 CB G:ASP66 5.0 126.5 1.0

Calcium binding site 8 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca802 b:128.6 occ:1.00 O G:GLY186 2.4 115.4 1.0 OD2 G:ASP259 2.4 164.2 1.0 OD1 G:ASP259 2.5 164.4 1.0 OD1 G:ASP187 2.7 115.3 1.0 CG G:ASP259 2.8 166.1 1.0 OE2 G:GLU209 3.0 119.1 1.0 OE1 G:GLU209 3.1 110.3 1.0 CD G:GLU209 3.4 113.9 1.0 C G:GLY186 3.5 111.4 1.0 CG G:ASP187 3.9 112.8 1.0 CA G:ASP187 4.0 98.0 1.0 N G:ASP187 4.1 99.0 1.0 NZ G:LYS166 4.2 107.7 1.0 CB G:ASP259 4.3 167.8 1.0 CG G:LYS166 4.3 105.7 1.0 CB G:ASP187 4.4 105.8 1.0 CA G:GLY186 4.5 112.1 1.0 N G:GLY167 4.6 118.2 1.0 O G:GLY167 4.6 122.3 1.0 O G:THR257 4.8 170.8 1.0 OD2 G:ASP187 4.9 115.5 1.0 CA G:LYS166 4.9 99.2 1.0 CA G:ASP259 4.9 169.3 1.0 CG G:GLU209 4.9 109.0 1.0

Calcium binding site 9 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca803 b:109.2 occ:1.00 OE2 G:GLU327 2.4 124.8 1.0 O G:GLU302 2.4 121.1 1.0 OE1 G:GLU327 2.8 123.6 1.0 CD G:GLU327 2.9 121.5 1.0 OD1 G:ASP303 3.1 127.8 1.0 C G:GLU302 3.6 116.0 1.0 OD1 G:ASN324 4.0 125.6 1.0 OG G:SER277 4.1 132.8 1.0 CG G:ASP303 4.3 125.5 1.0 CA G:ASP303 4.4 112.5 1.0 CG G:GLU327 4.4 117.8 1.0 CB G:GLU302 4.4 116.1 1.0 N G:ASP303 4.4 113.0 1.0 O G:GLN322 4.5 124.5 1.0 N G:ASN278 4.6 137.6 1.0 CA G:GLU302 4.6 116.7 1.0 CA G:ALA323 4.7 101.9 1.0 N G:ASN324 4.7 123.6 1.0 N G:GLY279 4.9 145.1 1.0 CB G:ASP303 4.9 118.7 1.0 CG G:ASN324 4.9 124.4 1.0 CA G:SER277 5.0 125.2 1.0

Calcium binding site 10 out of 14 in the Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of Full-Length Gelsolin Bound to the Barbed End of F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca804 b:95.3 occ:1.00 O G:GLY444 2.4 106.5 1.0 OE2 G:GLU475 2.4 106.8 1.0 O G:THR524 2.4 116.6 1.0 OE1 G:GLU475 2.9 110.3 1.0 CD G:GLU475 3.0 104.7 1.0 OD1 G:ASP445 3.5 112.3 1.0 C G:GLY444 3.6 103.7 1.0 C G:THR524 3.6 115.5 1.0 CA G:GLY444 4.4 99.7 1.0 CG G:GLU475 4.4 97.3 1.0 N G:THR524 4.4 113.7 1.0 CA G:SER525 4.5 124.4 1.0 N G:SER525 4.5 125.4 1.0 N G:ASP445 4.5 100.0 1.0 CA G:ASP445 4.6 100.9 1.0 CA G:THR524 4.6 115.6 1.0 CB G:SER525 4.7 124.0 1.0 C G:GLY523 4.7 102.3 1.0 CG G:ASP445 4.7 113.3 1.0 CG2 G:THR524 4.8 113.9 1.0 CG2 G:THR472 4.9 98.7 1.0 CA G:SER471 5.0 95.4 1.0

K.R.Barrie, G.Rebowski, R.Dominguez. Mechanism of Actin Filament Severing and Capping By Gelsolin. Biorxiv 2024.
ISSN: ISSN 2692-8205
PubMed: 39345426
DOI: 10.1101/2024.09.10.612341