Calcium in PDB 8w5s: Crystal Structure of Annexin A7 Mutant

The structure of Crystal Structure of Annexin A7 Mutant, PDB code: 8w5s was solved by Z.C.Hua, W.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.90 / 2.12
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	89.813, 89.813, 196.916, 90, 90, 120
R / Rfree (%)	25.7 / 31.5

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 31;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of Annexin A7 Mutant (pdb code 8w5s). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 31 binding sites of Calcium where determined in the Crystal Structure of Annexin A7 Mutant, PDB code: 8w5s:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:67.9 occ:1.00 O B:HOH612 2.7 49.7 1.0 O B:THR434 3.0 40.7 1.0 NE2 A:GLN219 3.0 35.6 1.0 C B:THR434 4.0 40.9 1.0 N B:THR434 4.1 42.5 1.0 CD A:GLN219 4.2 35.8 1.0 OD2 B:ASP436 4.3 40.1 1.0 CA B:THR434 4.6 41.8 1.0 OE1 A:GLN219 4.7 36.1 1.0 N B:ASP435 5.0 40.8 1.0

Calcium binding site 2 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:64.8 occ:1.00 N A:ILE188 2.8 39.1 1.0 O A:HOH676 3.0 41.8 1.0 N A:ARG189 3.6 39.4 1.0 O A:HOH686 3.6 38.9 1.0 N A:ASP190 3.7 39.2 1.0 OD2 A:ASP190 3.7 38.7 1.0 CA A:ILE188 4.0 39.0 1.0 CB A:ASP190 4.0 38.5 1.0 CG A:ASP190 4.1 38.6 1.0 O A:HOH681 4.1 43.9 1.0 C A:ILE188 4.2 39.1 1.0 CA A:ARG189 4.4 39.1 1.0 CA A:ASP190 4.5 38.7 1.0 CB A:ARG189 4.5 39.6 1.0 C A:ARG189 4.5 39.2 1.0 CB A:ILE188 4.7 38.5 1.0

Calcium binding site 3 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:65.3 occ:1.00 OE2 A:GLU242 2.2 39.8 1.0 O A:GLY200 2.5 40.7 1.0 O A:MET198 2.9 39.9 1.0 CD A:GLU242 3.4 39.6 1.0 O A:HOH616 3.4 42.9 1.0 C A:GLY200 3.5 40.7 1.0 N A:GLY200 3.8 40.2 1.0 NZ A:LYS199 3.8 40.0 1.0 O A:GLY202 4.0 40.7 1.0 C A:MET198 4.1 39.7 1.0 C A:LYS199 4.1 40.0 1.0 OE1 A:GLU242 4.2 39.7 1.0 CA A:GLY200 4.2 40.6 1.0 CG A:GLU242 4.3 38.7 1.0 N A:PHE201 4.4 40.8 1.0 CA A:LYS199 4.5 40.0 1.0 O A:LYS199 4.6 39.9 1.0 CA A:PHE201 4.7 40.6 1.0 N A:GLY202 4.8 40.7 1.0 N A:LYS199 4.8 39.6 1.0 C A:PHE201 4.9 40.8 1.0

Calcium binding site 4 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:62.8 occ:1.00 O A:THR203 2.1 42.4 1.0 OE1 A:GLU205 2.6 43.8 1.0 C A:THR203 3.3 41.4 1.0 CD A:GLU205 3.4 43.0 1.0 OE2 A:GLU205 3.4 43.4 1.0 N A:THR203 3.9 40.9 1.0 CA A:THR203 4.1 41.0 1.0 N A:ASP204 4.3 40.8 1.0 CA A:ASP204 4.4 40.5 1.0 N A:GLU205 4.5 40.8 1.0 CB A:THR203 4.7 40.8 1.0 CG A:GLU205 4.8 41.7 1.0 C A:ASP204 5.0 40.6 1.0

Calcium binding site 5 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca505 b:55.0 occ:1.00 OE1 A:GLU248 2.3 36.5 1.0 O A:LYS240 2.4 36.8 1.0 O A:LEU243 2.7 36.6 1.0 CD A:GLU248 3.4 36.2 1.0 C A:LYS240 3.6 36.5 1.0 C A:LEU243 3.8 36.5 1.0 OE2 A:GLU248 4.0 36.3 1.0 CA A:SER244 4.1 36.4 1.0 CB A:SER244 4.3 36.3 1.0 CA A:LYS240 4.4 36.2 1.0 N A:SER244 4.4 36.7 1.0 N A:SER241 4.5 36.5 1.0 CA A:SER241 4.6 36.5 1.0 CG A:GLU248 4.6 35.9 1.0 C A:SER241 4.6 37.0 1.0 O A:SER241 4.7 37.5 1.0 N A:LEU243 4.8 37.4 1.0 CA A:LEU243 5.0 36.8 1.0 CB A:LYS240 5.0 36.2 1.0

Calcium binding site 6 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca506 b:56.7 occ:1.00 O A:THR275 2.2 36.9 1.0 OE1 A:GLU277 2.5 36.1 1.0 CD A:GLU277 3.3 36.1 1.0 OE2 A:GLU277 3.3 36.5 1.0 C A:THR275 3.4 36.3 1.0 OH A:TYR402 3.9 35.0 1.0 NE2 A:GLN276 4.1 37.6 1.0 N A:THR275 4.2 36.7 1.0 CA A:THR275 4.3 36.4 1.0 N A:GLN276 4.4 36.3 1.0 CA A:GLN276 4.5 36.4 1.0 CB A:THR275 4.5 36.4 1.0 N A:GLU277 4.5 36.7 1.0 CZ A:TYR402 4.5 35.1 1.0 CE2 A:TYR402 4.6 34.9 1.0 CG A:GLU277 4.7 36.2 1.0

Calcium binding site 7 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca507 b:72.6 occ:1.00 OD1 A:ASP314 2.2 38.0 1.0 O A:GLY272 2.2 38.8 1.0 O A:MET270 2.8 38.5 1.0 CG A:ASP314 3.2 37.5 1.0 C A:GLY272 3.4 38.7 1.0 OD2 A:ASP314 3.6 37.2 1.0 N A:GLY272 4.0 38.2 1.0 C A:MET270 4.0 37.7 1.0 CA A:GLY272 4.2 38.4 1.0 O A:GLY274 4.3 37.0 1.0 N A:ALA273 4.4 38.6 1.0 CB A:ASP314 4.5 37.2 1.0 CA A:ALA273 4.5 38.2 1.0 C A:GLN271 4.6 38.2 1.0 C A:ALA273 4.8 38.1 1.0 CA A:MET270 4.8 37.2 1.0 N A:GLN271 4.9 37.8 1.0 CA A:GLN271 5.0 38.0 1.0

Calcium binding site 8 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca508 b:73.2 occ:1.00 O A:ARG312 2.8 37.9 1.0 O A:HOH655 2.9 39.4 1.0 O A:THR315 3.4 37.4 1.0 OE1 A:GLU320 3.9 37.4 1.0 C A:ARG312 3.9 37.4 1.0 O A:SER313 4.1 37.8 1.0 CA A:SER313 4.2 37.3 1.0 C A:SER313 4.4 37.6 1.0 N A:SER313 4.5 37.5 1.0 CB A:SER316 4.6 37.1 1.0 C A:THR315 4.6 37.2 1.0 CD A:GLU320 4.9 37.3 1.0

Calcium binding site 9 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca509 b:43.1 occ:1.00 O A:MET429 2.3 38.0 1.0 OD1 A:ASP473 2.3 38.1 1.0 O A:GLY431 2.4 38.1 1.0 O A:GLY433 2.7 38.1 1.0 OD2 A:ASP473 2.7 37.6 1.0 CG A:ASP473 2.9 37.8 1.0 C A:MET429 3.4 37.4 1.0 C A:GLY431 3.6 37.6 1.0 C A:GLY433 3.7 37.6 1.0 N A:GLY433 3.8 37.7 1.0 CA A:MET429 4.1 37.2 1.0 N A:GLY431 4.2 37.6 1.0 CA A:GLY433 4.3 37.4 1.0 N A:LYS430 4.3 37.3 1.0 CB A:ASP473 4.4 37.6 1.0 C A:ALA432 4.4 37.6 1.0 C A:LYS430 4.4 37.5 1.0 CA A:LYS430 4.5 37.5 1.0 CA A:ALA432 4.5 37.8 1.0 N A:ALA432 4.5 37.8 1.0 CB A:MET429 4.5 37.2 1.0 CA A:GLY431 4.6 37.4 1.0 OG1 A:THR434 4.6 37.8 1.0 N A:THR434 4.8 37.6 1.0 O A:LYS430 4.9 37.5 1.0

Calcium binding site 10 out of 31 in the Crystal Structure of Annexin A7 Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of Annexin A7 Mutant within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca501 b:45.9 occ:1.00 O B:PHE399 2.3 36.5 1.0 O B:SER396 2.3 36.1 1.0 OE1 B:GLU404 2.8 36.5 1.0 O B:HOH649 3.0 35.4 1.0 C B:PHE399 3.4 35.6 1.0 CD B:GLU404 3.5 36.5 1.0 C B:SER396 3.5 36.1 1.0 OE2 B:GLU404 3.6 36.6 1.0 CA B:SER400 3.9 35.8 1.0 N B:SER400 4.1 35.8 1.0 CA B:SER396 4.1 36.4 1.0 CB B:SER400 4.2 35.0 1.0 N B:ARG397 4.6 36.0 1.0 N B:PHE399 4.6 36.1 1.0 CA B:PHE399 4.6 36.0 1.0 O B:VAL395 4.8 36.4 1.0 CA B:ARG397 4.8 36.2 1.0 CG B:GLU404 4.8 36.0 1.0 CB B:SER396 4.9 36.2 1.0 C B:ARG397 4.9 36.6 1.0 O B:ARG397 5.0 36.6 1.0

Z.C.Hua, W.Tang. Structure Dissection of the Membrane Aggregation Mechanism Induced By Annexin A7 Mutation To Be Published.