Calcium in PDB 8y6b: Structure of Human LGI1-ADAM22 Complex in Space Group P212121
Protein crystallography data
The structure of Structure of Human LGI1-ADAM22 Complex in Space Group P212121, PDB code: 8y6b
was solved by
H.Liu,
F.Xu,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
42.46 /
3.49
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
55.448,
196.078,
420.75,
90,
90,
90
|
|
R / Rfree (%)
|
23.6 /
27.7
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Calcium atom in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
(pdb code 8y6b). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the
Structure of Human LGI1-ADAM22 Complex in Space Group P212121, PDB code: 8y6b:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 1 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca804
b:169.3
occ:1.00
|
OD1
|
A:ASP325
|
2.3
|
126.8
|
1.0
|
|
OD1
|
A:ASN436
|
2.4
|
144.4
|
1.0
|
|
O
|
A:CYS433
|
2.4
|
132.0
|
1.0
|
|
ND2
|
A:ASN436
|
2.6
|
139.9
|
1.0
|
|
CG
|
A:ASN436
|
2.7
|
143.6
|
1.0
|
|
OE2
|
A:GLU242
|
2.8
|
153.9
|
1.0
|
|
OD2
|
A:ASP325
|
2.8
|
145.3
|
1.0
|
|
CG
|
A:ASP325
|
2.9
|
137.2
|
1.0
|
|
C
|
A:CYS433
|
3.5
|
144.2
|
1.0
|
|
CD
|
A:GLU242
|
3.6
|
155.6
|
1.0
|
|
CB
|
A:CYS433
|
3.9
|
166.6
|
1.0
|
|
CB
|
A:ASN436
|
4.1
|
146.5
|
1.0
|
|
CA
|
A:CYS433
|
4.1
|
147.4
|
1.0
|
|
CG
|
A:GLU242
|
4.2
|
154.3
|
1.0
|
|
CB
|
A:ASP325
|
4.4
|
137.9
|
1.0
|
|
OE1
|
A:GLU242
|
4.5
|
150.7
|
1.0
|
|
SG
|
A:CYS433
|
4.5
|
188.1
|
1.0
|
|
N
|
A:LEU434
|
4.6
|
144.2
|
1.0
|
|
CB
|
A:GLU242
|
4.8
|
149.9
|
1.0
|
|
N
|
A:ASN436
|
4.8
|
149.8
|
1.0
|
|
CA
|
A:LEU434
|
4.8
|
152.2
|
1.0
|
|
O
|
A:ASN436
|
5.0
|
174.0
|
1.0
|
|
Calcium binding site 2 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 2 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca805
b:181.8
occ:1.00
|
OD1
|
A:ASN526
|
2.3
|
174.3
|
1.0
|
|
O
|
A:ILE512
|
2.4
|
180.1
|
1.0
|
|
OD1
|
A:ASP511
|
2.4
|
153.0
|
1.0
|
|
OE1
|
A:GLU514
|
2.5
|
203.8
|
1.0
|
|
O
|
A:ILE527
|
2.5
|
161.6
|
1.0
|
|
OE2
|
A:GLU514
|
2.7
|
202.7
|
1.0
|
|
CD
|
A:GLU514
|
2.9
|
204.8
|
1.0
|
|
CG
|
A:ASP511
|
3.1
|
155.8
|
1.0
|
|
OD2
|
A:ASP511
|
3.2
|
152.6
|
1.0
|
|
CG
|
A:ASN526
|
3.5
|
176.2
|
1.0
|
|
NH2
|
A:ARG504
|
3.5
|
173.0
|
1.0
|
|
C
|
A:ILE512
|
3.6
|
175.9
|
1.0
|
|
C
|
A:ILE527
|
3.6
|
163.4
|
1.0
|
|
N
|
A:ILE527
|
3.7
|
161.5
|
1.0
|
|
NE
|
A:ARG504
|
4.0
|
178.2
|
1.0
|
|
N
|
A:ILE512
|
4.0
|
175.7
|
1.0
|
|
CZ
|
A:ARG504
|
4.2
|
175.6
|
1.0
|
|
ND2
|
A:ASN526
|
4.2
|
175.9
|
1.0
|
|
CA
|
A:ILE527
|
4.3
|
159.2
|
1.0
|
|
CA
|
A:ILE512
|
4.3
|
175.9
|
1.0
|
|
CG
|
A:GLU514
|
4.4
|
205.8
|
1.0
|
|
C
|
A:ASN526
|
4.5
|
155.8
|
1.0
|
|
CB
|
A:ASP511
|
4.5
|
162.4
|
1.0
|
|
CA
|
A:ASN526
|
4.5
|
174.3
|
1.0
|
|
N
|
A:ARG513
|
4.6
|
184.9
|
1.0
|
|
CB
|
A:ASN526
|
4.6
|
176.4
|
1.0
|
|
CA
|
A:ARG513
|
4.7
|
180.8
|
1.0
|
|
N
|
A:HIS528
|
4.7
|
149.4
|
1.0
|
|
C
|
A:ASP511
|
4.8
|
178.8
|
1.0
|
|
CA
|
A:ASP511
|
4.9
|
171.3
|
1.0
|
|
CB
|
A:ILE512
|
4.9
|
172.0
|
1.0
|
|
CA
|
A:HIS528
|
5.0
|
152.7
|
1.0
|
|
N
|
A:GLU514
|
5.0
|
190.2
|
1.0
|
|
Calcium binding site 3 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 3 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca806
b:281.8
occ:1.00
|
OD2
|
A:ASP459
|
2.2
|
225.9
|
1.0
|
|
OE2
|
A:GLU456
|
2.2
|
282.2
|
1.0
|
|
OE1
|
A:GLU456
|
2.3
|
282.5
|
1.0
|
|
O
|
A:PHE451
|
2.3
|
246.7
|
1.0
|
|
CD
|
A:GLU456
|
2.5
|
281.1
|
1.0
|
|
O
|
A:GLU446
|
2.5
|
251.3
|
1.0
|
|
O
|
A:HOH901
|
2.5
|
233.4
|
1.0
|
|
OD1
|
A:ASN449
|
2.8
|
235.1
|
1.0
|
|
CG
|
A:ASP459
|
3.2
|
231.4
|
1.0
|
|
C
|
A:PHE451
|
3.6
|
245.2
|
1.0
|
|
C
|
A:GLU446
|
3.6
|
249.5
|
1.0
|
|
CG
|
A:ASN449
|
3.7
|
234.3
|
1.0
|
|
CB
|
A:ASP459
|
3.8
|
243.9
|
1.0
|
|
CG
|
A:GLU456
|
4.0
|
276.9
|
1.0
|
|
CA
|
A:CYS447
|
4.0
|
249.8
|
1.0
|
|
ND2
|
A:ASN449
|
4.1
|
233.8
|
1.0
|
|
N
|
A:GLU453
|
4.2
|
261.8
|
1.0
|
|
OD1
|
A:ASP459
|
4.2
|
231.1
|
1.0
|
|
N
|
A:CYS447
|
4.3
|
244.3
|
1.0
|
|
N
|
A:GLY448
|
4.4
|
247.4
|
1.0
|
|
CA
|
A:ILE452
|
4.4
|
253.8
|
1.0
|
|
N
|
A:PHE451
|
4.4
|
235.9
|
1.0
|
|
N
|
A:ILE452
|
4.4
|
257.4
|
1.0
|
|
CA
|
A:PHE451
|
4.6
|
240.0
|
1.0
|
|
CB
|
A:GLU453
|
4.6
|
238.4
|
1.0
|
|
C
|
A:CYS447
|
4.6
|
233.0
|
1.0
|
|
N
|
A:GLU446
|
4.6
|
233.6
|
1.0
|
|
CG
|
A:GLU453
|
4.6
|
222.7
|
1.0
|
|
SG
|
A:CYS477
|
4.6
|
267.4
|
1.0
|
|
N
|
A:ASN449
|
4.7
|
217.1
|
1.0
|
|
C
|
A:ILE452
|
4.7
|
250.5
|
1.0
|
|
CA
|
A:GLU446
|
4.8
|
224.6
|
1.0
|
|
CB
|
A:GLU456
|
4.9
|
270.2
|
1.0
|
|
Calcium binding site 4 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 4 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca604
b:82.1
occ:1.00
|
OE2
|
D:GLU336
|
2.5
|
135.4
|
1.0
|
|
OD2
|
D:ASP334
|
2.6
|
110.5
|
1.0
|
|
O
|
D:VAL382
|
2.7
|
96.6
|
1.0
|
|
OD1
|
D:ASP381
|
2.8
|
112.5
|
1.0
|
|
OE1
|
D:GLU383
|
3.3
|
124.6
|
1.0
|
|
CD
|
D:GLU336
|
3.4
|
128.0
|
1.0
|
|
CG
|
D:ASP334
|
3.5
|
114.5
|
1.0
|
|
CG
|
D:GLU336
|
3.5
|
120.8
|
1.0
|
|
OD1
|
D:ASP334
|
3.6
|
108.8
|
1.0
|
|
CG
|
D:ASP381
|
3.7
|
109.5
|
1.0
|
|
NZ
|
D:LYS436
|
3.8
|
104.6
|
1.0
|
|
C
|
D:VAL382
|
3.9
|
91.6
|
1.0
|
|
OD2
|
D:ASP381
|
4.0
|
113.0
|
1.0
|
|
CE
|
D:LYS436
|
4.3
|
95.7
|
1.0
|
|
N
|
D:VAL382
|
4.4
|
93.9
|
1.0
|
|
OE1
|
D:GLU336
|
4.5
|
124.1
|
1.0
|
|
CD
|
D:GLU383
|
4.6
|
127.4
|
1.0
|
|
O
|
D:ILE335
|
4.8
|
128.0
|
1.0
|
|
CA
|
D:VAL382
|
4.8
|
91.8
|
1.0
|
|
N
|
D:GLU383
|
4.8
|
91.2
|
1.0
|
|
CA
|
D:GLU383
|
4.8
|
104.7
|
1.0
|
|
CB
|
D:ASP334
|
4.9
|
113.6
|
1.0
|
|
CD
|
D:LYS436
|
4.9
|
107.4
|
1.0
|
|
CB
|
D:GLU336
|
5.0
|
119.1
|
1.0
|
|
Calcium binding site 5 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 5 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca804
b:82.4
occ:1.00
|
O
|
B:GLU446
|
2.0
|
115.1
|
1.0
|
|
OE2
|
B:GLU456
|
2.2
|
126.8
|
1.0
|
|
OE1
|
B:GLU456
|
2.5
|
107.4
|
1.0
|
|
OD1
|
B:ASN449
|
2.6
|
83.0
|
1.0
|
|
OE1
|
B:GLU453
|
2.6
|
91.9
|
1.0
|
|
CD
|
B:GLU456
|
2.6
|
106.5
|
1.0
|
|
OD2
|
B:ASP459
|
2.6
|
64.7
|
1.0
|
|
O
|
B:PHE451
|
2.9
|
69.3
|
1.0
|
|
CG
|
B:ASN449
|
3.1
|
78.4
|
1.0
|
|
C
|
B:GLU446
|
3.2
|
112.6
|
1.0
|
|
ND2
|
B:ASN449
|
3.3
|
72.7
|
1.0
|
|
CD
|
B:GLU453
|
3.8
|
111.8
|
1.0
|
|
CG
|
B:ASP459
|
3.8
|
93.8
|
1.0
|
|
N
|
B:GLU446
|
3.9
|
84.8
|
1.0
|
|
CB
|
B:GLU453
|
4.0
|
109.8
|
1.0
|
|
N
|
B:CYS447
|
4.1
|
104.7
|
1.0
|
|
C
|
B:PHE451
|
4.1
|
73.9
|
1.0
|
|
CA
|
B:CYS447
|
4.1
|
101.1
|
1.0
|
|
CG
|
B:GLU456
|
4.1
|
86.7
|
1.0
|
|
CA
|
B:GLU446
|
4.1
|
94.1
|
1.0
|
|
CB
|
B:ASN449
|
4.2
|
76.0
|
1.0
|
|
N
|
B:GLU453
|
4.3
|
95.0
|
1.0
|
|
CG
|
B:GLU453
|
4.5
|
113.5
|
1.0
|
|
N
|
B:ASN449
|
4.5
|
96.2
|
1.0
|
|
N
|
B:PHE451
|
4.6
|
47.0
|
1.0
|
|
CB
|
B:ASP459
|
4.6
|
89.5
|
1.0
|
|
N
|
B:GLY448
|
4.6
|
96.0
|
1.0
|
|
C
|
B:CYS447
|
4.7
|
88.4
|
1.0
|
|
OD1
|
B:ASP459
|
4.7
|
109.6
|
1.0
|
|
OE2
|
B:GLU453
|
4.7
|
131.1
|
1.0
|
|
C
|
B:ILE452
|
4.8
|
94.5
|
1.0
|
|
CA
|
B:GLU453
|
4.8
|
109.1
|
1.0
|
|
CB
|
B:GLU446
|
4.9
|
106.0
|
1.0
|
|
CA
|
B:PHE451
|
4.9
|
66.7
|
1.0
|
|
CA
|
B:ILE452
|
4.9
|
75.5
|
1.0
|
|
CA
|
B:ASN449
|
4.9
|
84.4
|
1.0
|
|
CB
|
B:GLU456
|
4.9
|
87.7
|
1.0
|
|
N
|
B:ILE452
|
5.0
|
87.8
|
1.0
|
|
Calcium binding site 6 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 6 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca805
b:36.2
occ:1.00
|
OD1
|
B:ASN436
|
2.3
|
59.0
|
1.0
|
|
OD1
|
B:ASP325
|
2.4
|
50.4
|
1.0
|
|
O
|
B:CYS433
|
2.4
|
57.6
|
1.0
|
|
OD2
|
B:ASP325
|
2.5
|
59.7
|
1.0
|
|
O
|
B:HOH903
|
2.5
|
60.4
|
1.0
|
|
OE2
|
B:GLU242
|
2.5
|
77.3
|
1.0
|
|
O
|
B:HOH931
|
2.6
|
60.7
|
1.0
|
|
CG
|
B:ASP325
|
2.7
|
34.7
|
1.0
|
|
CG
|
B:ASN436
|
3.2
|
56.8
|
1.0
|
|
CD
|
B:GLU242
|
3.3
|
75.6
|
1.0
|
|
ND2
|
B:ASN436
|
3.4
|
57.3
|
1.0
|
|
C
|
B:CYS433
|
3.6
|
52.9
|
1.0
|
|
CG
|
B:GLU242
|
3.6
|
35.3
|
1.0
|
|
CB
|
B:GLU242
|
4.1
|
35.1
|
1.0
|
|
CB
|
B:ASP325
|
4.2
|
34.6
|
1.0
|
|
OE1
|
B:GLU242
|
4.3
|
99.2
|
1.0
|
|
N
|
B:LEU434
|
4.4
|
43.3
|
1.0
|
|
CA
|
B:CYS433
|
4.5
|
49.3
|
1.0
|
|
CB
|
B:CYS433
|
4.5
|
58.0
|
1.0
|
|
O
|
B:TYR240
|
4.5
|
62.8
|
1.0
|
|
CA
|
B:LEU434
|
4.5
|
37.2
|
1.0
|
|
O
|
B:ASN436
|
4.5
|
66.7
|
1.0
|
|
CB
|
B:ASN436
|
4.6
|
37.5
|
1.0
|
|
N
|
B:GLU242
|
4.6
|
35.1
|
1.0
|
|
SG
|
B:CYS433
|
4.8
|
70.1
|
1.0
|
|
N
|
B:ASP325
|
4.8
|
40.5
|
1.0
|
|
N
|
B:ASN436
|
4.8
|
35.7
|
1.0
|
|
C
|
B:LEU434
|
4.9
|
36.1
|
1.0
|
|
CA
|
B:ASP325
|
4.9
|
40.9
|
1.0
|
|
Calcium binding site 7 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 7 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca806
b:34.7
occ:1.00
|
OD1
|
B:ASN526
|
2.4
|
69.6
|
1.0
|
|
OE2
|
B:GLU514
|
2.4
|
49.5
|
1.0
|
|
OD1
|
B:ASP511
|
2.4
|
72.2
|
1.0
|
|
OE1
|
B:GLU514
|
2.4
|
92.2
|
1.0
|
|
O
|
B:ILE512
|
2.4
|
55.8
|
1.0
|
|
O
|
B:ILE527
|
2.6
|
34.5
|
1.0
|
|
CD
|
B:GLU514
|
2.7
|
74.4
|
1.0
|
|
OD2
|
B:ASP511
|
2.9
|
56.1
|
1.0
|
|
CG
|
B:ASP511
|
3.0
|
60.0
|
1.0
|
|
CG
|
B:ASN526
|
3.5
|
57.0
|
1.0
|
|
C
|
B:ILE512
|
3.6
|
34.8
|
1.0
|
|
C
|
B:ILE527
|
3.7
|
46.2
|
1.0
|
|
N
|
B:ILE527
|
3.7
|
34.6
|
1.0
|
|
N
|
B:ILE512
|
3.9
|
56.7
|
1.0
|
|
ND2
|
B:ASN526
|
4.2
|
36.2
|
1.0
|
|
CG
|
B:GLU514
|
4.2
|
69.8
|
1.0
|
|
CA
|
B:ILE512
|
4.3
|
34.7
|
1.0
|
|
CB
|
B:ASP511
|
4.4
|
49.2
|
1.0
|
|
CA
|
B:ILE527
|
4.4
|
34.5
|
1.0
|
|
C
|
B:ASN526
|
4.6
|
34.6
|
1.0
|
|
N
|
B:ARG513
|
4.6
|
50.2
|
1.0
|
|
CD
|
B:ARG504
|
4.6
|
62.7
|
1.0
|
|
CA
|
B:ASN526
|
4.6
|
52.7
|
1.0
|
|
CB
|
B:ASN526
|
4.7
|
50.1
|
1.0
|
|
C
|
B:ASP511
|
4.7
|
48.8
|
1.0
|
|
O
|
B:GLU505
|
4.7
|
56.5
|
1.0
|
|
N
|
B:HIS528
|
4.8
|
34.3
|
1.0
|
|
CA
|
B:ARG513
|
4.8
|
35.1
|
1.0
|
|
C
|
B:ARG513
|
4.8
|
35.2
|
1.0
|
|
CA
|
B:ASP511
|
4.8
|
45.9
|
1.0
|
|
N
|
B:GLU514
|
4.8
|
44.5
|
1.0
|
|
Calcium binding site 8 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 8 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca804
b:72.7
occ:1.00
|
OD1
|
C:ASN436
|
2.3
|
75.1
|
1.0
|
|
OD1
|
C:ASP325
|
2.3
|
73.4
|
1.0
|
|
OE2
|
C:GLU242
|
2.5
|
82.1
|
1.0
|
|
O
|
C:HOH901
|
2.6
|
66.7
|
1.0
|
|
O
|
C:CYS433
|
2.6
|
48.8
|
1.0
|
|
OD2
|
C:ASP325
|
2.6
|
81.7
|
1.0
|
|
CG
|
C:ASP325
|
2.8
|
72.7
|
1.0
|
|
O
|
C:HOH916
|
2.8
|
65.0
|
1.0
|
|
CG
|
C:ASN436
|
3.0
|
70.2
|
1.0
|
|
ND2
|
C:ASN436
|
3.1
|
73.5
|
1.0
|
|
CD
|
C:GLU242
|
3.3
|
85.0
|
1.0
|
|
CG
|
C:GLU242
|
3.7
|
76.0
|
1.0
|
|
C
|
C:CYS433
|
3.7
|
60.6
|
1.0
|
|
CB
|
C:GLU242
|
4.1
|
67.2
|
1.0
|
|
OE1
|
C:GLU242
|
4.3
|
90.2
|
1.0
|
|
CB
|
C:CYS433
|
4.3
|
87.5
|
1.0
|
|
CB
|
C:ASP325
|
4.3
|
54.7
|
1.0
|
|
CA
|
C:CYS433
|
4.4
|
67.2
|
1.0
|
|
CB
|
C:ASN436
|
4.4
|
54.6
|
1.0
|
|
O
|
C:ASN436
|
4.7
|
104.2
|
1.0
|
|
N
|
C:LEU434
|
4.7
|
50.2
|
1.0
|
|
SG
|
C:CYS433
|
4.7
|
102.7
|
1.0
|
|
CA
|
C:LEU434
|
4.8
|
53.2
|
1.0
|
|
N
|
C:ASP325
|
4.8
|
60.1
|
1.0
|
|
N
|
C:GLU242
|
4.9
|
54.7
|
1.0
|
|
CA
|
C:ASP325
|
4.9
|
51.3
|
1.0
|
|
O
|
C:TYR240
|
5.0
|
75.2
|
1.0
|
|
Calcium binding site 9 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 9 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca805
b:44.3
occ:1.00
|
OD1
|
C:ASN526
|
2.3
|
68.4
|
1.0
|
|
OD1
|
C:ASP511
|
2.4
|
65.7
|
1.0
|
|
O
|
C:ILE512
|
2.5
|
87.7
|
1.0
|
|
OE1
|
C:GLU514
|
2.5
|
73.2
|
1.0
|
|
OE2
|
C:GLU514
|
2.6
|
69.4
|
1.0
|
|
O
|
C:ILE527
|
2.7
|
48.9
|
1.0
|
|
CD
|
C:GLU514
|
2.9
|
62.3
|
1.0
|
|
CG
|
C:ASP511
|
3.0
|
66.5
|
1.0
|
|
OD2
|
C:ASP511
|
3.0
|
67.7
|
1.0
|
|
CG
|
C:ASN526
|
3.5
|
55.9
|
1.0
|
|
C
|
C:ILE512
|
3.6
|
59.4
|
1.0
|
|
C
|
C:ILE527
|
3.8
|
47.2
|
1.0
|
|
N
|
C:ILE527
|
3.8
|
47.8
|
1.0
|
|
N
|
C:ILE512
|
4.0
|
67.7
|
1.0
|
|
ND2
|
C:ASN526
|
4.2
|
51.4
|
1.0
|
|
CG
|
C:GLU514
|
4.3
|
65.2
|
1.0
|
|
O
|
C:HOH929
|
4.4
|
52.4
|
1.0
|
|
CA
|
C:ILE512
|
4.4
|
58.6
|
1.0
|
|
CB
|
C:ASP511
|
4.4
|
72.5
|
1.0
|
|
CD
|
C:ARG504
|
4.4
|
50.9
|
1.0
|
|
CA
|
C:ILE527
|
4.4
|
49.0
|
1.0
|
|
N
|
C:ARG513
|
4.5
|
55.4
|
1.0
|
|
CA
|
C:ASN526
|
4.6
|
49.4
|
1.0
|
|
C
|
C:ASN526
|
4.6
|
48.2
|
1.0
|
|
CB
|
C:ASN526
|
4.6
|
54.5
|
1.0
|
|
CA
|
C:ARG513
|
4.6
|
67.8
|
1.0
|
|
O
|
C:GLU505
|
4.7
|
74.4
|
1.0
|
|
N
|
C:GLU514
|
4.7
|
86.5
|
1.0
|
|
C
|
C:ASP511
|
4.7
|
91.6
|
1.0
|
|
C
|
C:ARG513
|
4.8
|
74.8
|
1.0
|
|
N
|
C:HIS528
|
4.8
|
49.6
|
1.0
|
|
CA
|
C:ASP511
|
4.8
|
78.9
|
1.0
|
|
NH1
|
C:ARG504
|
4.8
|
82.4
|
1.0
|
|
CB
|
C:GLU514
|
4.9
|
70.2
|
1.0
|
|
CG
|
C:ARG504
|
4.9
|
69.0
|
1.0
|
|
CG1
|
C:ILE527
|
5.0
|
57.8
|
1.0
|
|
Calcium binding site 10 out
of 12 in 8y6b
Go back to
Calcium Binding Sites List in 8y6b
Calcium binding site 10 out
of 12 in the Structure of Human LGI1-ADAM22 Complex in Space Group P212121
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structure of Human LGI1-ADAM22 Complex in Space Group P212121 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca806
b:129.5
occ:1.00
|
O
|
C:PHE451
|
2.3
|
111.7
|
1.0
|
|
O
|
C:GLU446
|
2.3
|
139.7
|
1.0
|
|
OE2
|
C:GLU456
|
2.4
|
157.3
|
1.0
|
|
OD1
|
C:ASN449
|
2.4
|
112.4
|
1.0
|
|
O
|
C:HOH906
|
2.4
|
110.5
|
1.0
|
|
OD2
|
C:ASP459
|
2.5
|
123.0
|
1.0
|
|
CD
|
C:GLU456
|
3.0
|
159.5
|
1.0
|
|
OE1
|
C:GLU456
|
3.1
|
155.1
|
1.0
|
|
CG
|
C:ASN449
|
3.3
|
116.4
|
1.0
|
|
C
|
C:PHE451
|
3.5
|
114.5
|
1.0
|
|
C
|
C:GLU446
|
3.5
|
143.6
|
1.0
|
|
ND2
|
C:ASN449
|
3.5
|
104.8
|
1.0
|
|
CG
|
C:ASP459
|
3.7
|
129.5
|
1.0
|
|
N
|
C:GLU453
|
4.2
|
145.6
|
1.0
|
|
CA
|
C:CYS447
|
4.2
|
156.0
|
1.0
|
|
N
|
C:PHE451
|
4.2
|
118.2
|
1.0
|
|
CB
|
C:GLU453
|
4.3
|
155.3
|
1.0
|
|
N
|
C:CYS447
|
4.3
|
141.6
|
1.0
|
|
N
|
C:GLU446
|
4.3
|
157.7
|
1.0
|
|
CB
|
C:ASP459
|
4.3
|
131.9
|
1.0
|
|
CG
|
C:GLU456
|
4.3
|
153.5
|
1.0
|
|
CA
|
C:PHE451
|
4.4
|
100.9
|
1.0
|
|
N
|
C:ILE452
|
4.4
|
118.9
|
1.0
|
|
CA
|
C:ILE452
|
4.4
|
121.6
|
1.0
|
|
CA
|
C:GLU446
|
4.5
|
147.8
|
1.0
|
|
CG
|
C:GLU453
|
4.6
|
148.5
|
1.0
|
|
N
|
C:ASN449
|
4.6
|
150.7
|
1.0
|
|
C
|
C:ILE452
|
4.6
|
136.0
|
1.0
|
|
N
|
C:GLY448
|
4.6
|
159.4
|
1.0
|
|
CB
|
C:ASN449
|
4.6
|
127.5
|
1.0
|
|
OD1
|
C:ASP459
|
4.7
|
124.0
|
1.0
|
|
C
|
C:CYS447
|
4.8
|
152.7
|
1.0
|
|
CB
|
C:PHE451
|
4.8
|
89.3
|
1.0
|
|
CA
|
C:GLU453
|
4.9
|
156.7
|
1.0
|
|
Reference:
H.Liu,
F.Xu.
Structure of Human LGI1-ADAM22 Complex in Space Group P212121 To Be Published.
Page generated: Fri Jul 19 12:47:33 2024
|
