Calcium in PDB 9bbf: Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer

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>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Calcium atom in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer (pdb code 9bbf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer, PDB code: 9bbf:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca901 b:67.0 occ:1.00 OD2 A:ASP224 2.3 66.7 1.0 OD2 A:ASP273 2.3 61.1 1.0 OD2 A:ASP222 2.3 69.1 1.0 OE2 A:GLU231 2.4 65.3 1.0 O A:GLU263 2.5 63.7 1.0 O A:ASN260 2.5 67.7 1.0 CA A:CA902 2.9 73.3 1.0 CG A:ASP224 3.2 66.7 1.0 CD A:GLU231 3.4 65.3 1.0 CG A:ASP222 3.5 69.1 1.0 CG A:ASP273 3.5 61.1 1.0 C A:GLU263 3.6 63.7 1.0 OE1 A:GLU231 3.7 65.3 1.0 C A:ASN260 3.7 67.7 1.0 OD1 A:ASP224 3.9 66.7 1.0 O A:SER264 4.0 59.2 1.0 OD1 A:ASP222 4.0 69.1 1.0 CB A:ASP224 4.1 66.7 1.0 CB A:ASP273 4.2 61.1 1.0 CA A:SER264 4.2 59.2 1.0 C A:SER264 4.3 59.2 1.0 N A:SER264 4.4 59.2 1.0 OG1 A:THR266 4.4 59.0 1.0 CA A:TYR261 4.4 66.3 1.0 OD1 A:ASP273 4.5 61.1 1.0 N A:GLU263 4.5 63.7 1.0 N A:TYR261 4.5 66.3 1.0 CB A:ASP222 4.6 69.1 1.0 CA A:GLU263 4.7 63.7 1.0 N A:ASN260 4.7 67.7 1.0 C A:TYR261 4.7 66.3 1.0 CG A:GLU231 4.7 65.3 1.0 CA A:ASN260 4.7 67.7 1.0 N A:LEU262 5.0 68.0 1.0 CB A:SER259 5.0 64.0 1.0

Calcium binding site 2 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca902 b:73.3 occ:1.00 OD1 A:ASP222 2.2 69.1 1.0 OE1 A:GLU231 2.3 65.3 1.0 OD2 A:ASP224 2.3 66.7 1.0 OD1 A:ASP224 2.4 66.7 1.0 OD2 A:ASP222 2.5 69.1 1.0 CG A:ASP224 2.6 66.7 1.0 CG A:ASP222 2.7 69.1 1.0 CA A:CA901 2.9 67.0 1.0 CD A:GLU231 3.1 65.3 1.0 OE2 A:GLU231 3.2 65.3 1.0 OD1 A:ASP220 3.4 66.7 1.0 O A:ILE226 3.5 62.1 1.0 CA A:TYR261 3.8 66.3 1.0 O A:TYR261 3.9 66.3 1.0 O A:ASN260 3.9 67.7 1.0 C A:TYR261 4.0 66.3 1.0 CB A:ASP224 4.1 66.7 1.0 CB A:ASP222 4.2 69.1 1.0 CG A:ASP220 4.4 66.7 1.0 CG A:GLU231 4.5 65.3 1.0 CB A:TYR261 4.5 66.3 1.0 C A:ILE226 4.6 62.1 1.0 N A:ASP224 4.6 66.7 1.0 N A:ASP222 4.7 69.1 1.0 CB A:ILE226 4.7 62.1 1.0 C A:ASN260 4.7 67.7 1.0 OD1 A:ASP228 4.7 65.8 1.0 N A:TYR261 4.7 66.3 1.0 OD2 A:ASP220 4.7 66.7 1.0 O A:GLU263 4.8 63.7 1.0 OD2 A:ASP273 4.9 61.1 1.0 CB A:GLU231 4.9 65.3 1.0 CA A:ASP222 4.9 69.1 1.0 CA A:ASP224 5.0 66.7 1.0 CG2 A:ILE226 5.0 62.1 1.0

Calcium binding site 3 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca901 b:56.8 occ:1.00 OD2 B:ASP224 2.3 57.6 1.0 OD2 B:ASP273 2.3 50.2 1.0 O B:ASN260 2.4 58.7 1.0 OE2 B:GLU231 2.4 58.9 1.0 OE1 B:GLU231 2.5 58.9 1.0 OD2 B:ASP222 2.5 61.3 1.0 CD B:GLU231 2.6 58.9 1.0 O B:GLU263 3.1 57.4 1.0 CG B:ASP224 3.4 57.6 1.0 CG B:ASP273 3.5 50.2 1.0 C B:ASN260 3.6 58.7 1.0 CA B:CA902 3.6 67.3 1.0 CG B:ASP222 3.7 61.3 1.0 OG B:SER259 3.7 56.1 1.0 CG B:GLU231 3.8 58.9 1.0 CA B:TYR261 4.1 60.1 1.0 OD1 B:ASP224 4.1 57.6 1.0 CB B:ASP273 4.2 50.2 1.0 OD1 B:ASP222 4.3 61.3 1.0 N B:TYR261 4.3 60.1 1.0 C B:GLU263 4.3 57.4 1.0 C B:TYR261 4.4 60.1 1.0 CB B:ASP224 4.5 57.6 1.0 OD1 B:ASP273 4.5 50.2 1.0 OD1 B:ASN260 4.6 58.7 1.0 OG1 B:THR266 4.6 51.1 1.0 O B:SER264 4.6 53.2 1.0 N B:LEU262 4.7 61.0 1.0 CA B:ASN260 4.7 58.7 1.0 N B:ASN260 4.8 58.7 1.0 CB B:ASP222 4.8 61.3 1.0 CB B:SER259 4.8 56.1 1.0 N B:GLU263 4.9 57.4 1.0 C B:SER264 4.9 53.2 1.0 CA B:SER264 4.9 53.2 1.0 O B:TYR261 4.9 60.1 1.0 CB B:GLU231 5.0 58.9 1.0

Calcium binding site 4 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca902 b:67.3 occ:1.00 OD1 B:ASP224 2.3 57.6 1.0 OE1 B:GLU231 2.3 58.9 1.0 OD1 B:ASP222 2.3 61.3 1.0 OD1 B:ASP220 2.5 63.7 1.0 O B:ILE226 2.7 56.6 1.0 OD2 B:ASP224 3.0 57.6 1.0 CG B:ASP224 3.0 57.6 1.0 CG B:ASP222 3.0 61.3 1.0 OD2 B:ASP222 3.0 61.3 1.0 CD B:GLU231 3.5 58.9 1.0 CG B:ASP220 3.6 63.7 1.0 CA B:CA901 3.6 56.8 1.0 C B:ILE226 3.8 56.6 1.0 OD2 B:ASP220 4.1 63.7 1.0 OD1 B:ASP228 4.2 61.0 1.0 OE2 B:GLU231 4.2 58.9 1.0 O B:TYR261 4.3 60.1 1.0 CB B:ILE226 4.3 56.6 1.0 CB B:ASP224 4.4 57.6 1.0 CA B:ILE226 4.5 56.6 1.0 CB B:ASP222 4.5 61.3 1.0 N B:ILE226 4.5 56.6 1.0 CB B:GLU231 4.6 58.9 1.0 CA B:TYR261 4.6 60.1 1.0 N B:ASP224 4.6 57.6 1.0 CG B:GLU231 4.6 58.9 1.0 N B:ASP222 4.6 61.3 1.0 C B:PRO227 4.7 62.0 1.0 C B:TYR261 4.7 60.1 1.0 O B:PRO227 4.7 62.0 1.0 CG2 B:ILE226 4.7 56.6 1.0 CB B:ASP220 4.8 63.7 1.0 N B:PRO227 4.8 62.0 1.0 N B:ASP228 4.9 61.0 1.0 N B:THR221 4.9 61.9 1.0 CA B:ASP220 4.9 63.7 1.0 CA B:ASP228 4.9 61.0 1.0 CA B:ASP222 5.0 61.3 1.0 N B:ASN223 5.0 60.7 1.0

Calcium binding site 5 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca901 b:55.5 occ:1.00 OD2 C:ASP224 2.3 52.6 1.0 OD2 C:ASP273 2.3 44.1 1.0 OD2 C:ASP222 2.4 57.5 1.0 O C:GLU263 2.6 50.5 1.0 O C:ASN260 2.6 51.9 1.0 OE2 C:GLU231 2.7 54.6 1.0 CA C:CA902 3.2 61.3 1.0 O C:SER264 3.3 45.6 1.0 CG C:ASP273 3.4 44.1 1.0 CG C:ASP224 3.4 52.6 1.0 OG C:SER259 3.6 49.9 1.0 CG C:ASP222 3.6 57.5 1.0 C C:GLU263 3.7 50.5 1.0 CD C:GLU231 3.8 54.6 1.0 C C:SER264 3.8 45.6 1.0 C C:ASN260 3.8 51.9 1.0 CB C:ASP273 3.9 44.1 1.0 CA C:SER264 4.0 45.6 1.0 CB C:ASP224 4.2 52.6 1.0 OD1 C:ASP224 4.2 52.6 1.0 OD1 C:ASP222 4.3 57.5 1.0 N C:SER264 4.3 45.6 1.0 OG1 C:THR266 4.3 42.9 1.0 OD1 C:ASP273 4.4 44.1 1.0 OE1 C:GLU231 4.5 54.6 1.0 CA C:TYR261 4.5 55.0 1.0 CB C:ASP222 4.6 57.5 1.0 N C:TYR261 4.6 55.0 1.0 N C:ASN260 4.7 51.9 1.0 C C:TYR261 4.8 55.0 1.0 N C:GLU263 4.8 50.5 1.0 CA C:ASN260 4.8 51.9 1.0 CG C:GLU231 4.9 54.6 1.0 N C:ASN265 4.9 44.4 1.0 CB C:SER259 4.9 49.9 1.0 CA C:GLU263 4.9 50.5 1.0 OD1 C:ASN260 5.0 51.9 1.0

Calcium binding site 6 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca902 b:61.3 occ:1.00 OD1 C:ASP222 2.3 57.5 1.0 OE1 C:GLU231 2.3 54.6 1.0 OD2 C:ASP224 2.3 52.6 1.0 OE2 C:GLU231 2.3 54.6 1.0 OD1 C:ASP224 2.3 52.6 1.0 OD2 C:ASP222 2.4 57.5 1.0 CG C:ASP224 2.6 52.6 1.0 CD C:GLU231 2.6 54.6 1.0 CG C:ASP222 2.7 57.5 1.0 CA C:CA901 3.2 55.5 1.0 OD1 C:ASP220 3.4 58.1 1.0 O C:ILE226 3.6 51.4 1.0 CA C:TYR261 3.8 55.0 1.0 O C:TYR261 4.0 55.0 1.0 CB C:ASP224 4.1 52.6 1.0 CG C:GLU231 4.1 54.6 1.0 O C:ASN260 4.1 51.9 1.0 CB C:ASP222 4.2 57.5 1.0 C C:TYR261 4.2 55.0 1.0 OD1 C:ASP228 4.3 57.3 1.0 CG C:ASP220 4.4 58.1 1.0 CB C:TYR261 4.5 55.0 1.0 C C:ILE226 4.6 51.4 1.0 CB C:ILE226 4.7 51.4 1.0 N C:ASP222 4.7 57.5 1.0 N C:ASP224 4.7 52.6 1.0 OD2 C:ASP220 4.7 58.1 1.0 N C:TYR261 4.8 55.0 1.0 C C:ASN260 4.9 51.9 1.0 CB C:GLU231 4.9 54.6 1.0 CA C:ASP222 4.9 57.5 1.0 CA C:ASP224 4.9 52.6 1.0

Calcium binding site 7 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca901 b:93.1 occ:1.00 OD2 D:ASP273 2.3 78.7 1.0 OD2 D:ASP224 2.3 90.3 1.0 OE2 D:GLU231 2.4 88.6 1.0 O D:GLU263 2.4 85.5 1.0 O D:ASN260 2.6 89.1 1.0 CA D:CA902 3.2 94.4 1.0 CD D:GLU231 3.3 88.6 1.0 C D:GLU263 3.5 85.5 1.0 CG D:ASP273 3.5 78.7 1.0 CG D:ASP224 3.5 90.3 1.0 OE1 D:GLU231 3.7 88.6 1.0 C D:ASN260 3.8 89.1 1.0 CA D:SER264 4.0 82.9 1.0 N D:SER264 4.2 82.9 1.0 CA D:TYR261 4.2 89.9 1.0 CB D:ASP273 4.3 78.7 1.0 O D:SER264 4.3 82.9 1.0 C D:SER264 4.3 82.9 1.0 OD1 D:ASP224 4.3 90.3 1.0 N D:GLU263 4.4 85.5 1.0 OD1 D:ASP273 4.4 78.7 1.0 N D:TYR261 4.5 89.9 1.0 CB D:ASP224 4.5 90.3 1.0 C D:TYR261 4.5 89.9 1.0 CG D:GLU231 4.5 88.6 1.0 CA D:GLU263 4.6 85.5 1.0 N D:LEU262 4.6 89.2 1.0 OD1 D:ASN260 4.8 89.1 1.0 CA D:ASN260 4.9 89.1 1.0 N D:ASN260 4.9 89.1 1.0

Calcium binding site 8 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca902 b:94.4 occ:1.00 OD1 D:ASP224 2.3 90.3 1.0 OD2 D:ASP224 2.4 90.3 1.0 OE1 D:GLU231 2.4 88.6 1.0 CG D:ASP224 2.7 90.3 1.0 CA D:CA901 3.2 93.1 1.0 CD D:GLU231 3.2 88.6 1.0 OD1 D:ASP220 3.3 95.2 1.0 OE2 D:GLU231 3.5 88.6 1.0 O D:ILE226 3.6 85.7 1.0 CA D:TYR261 3.9 89.9 1.0 O D:TYR261 4.1 89.9 1.0 CB D:ASP224 4.2 90.3 1.0 C D:TYR261 4.2 89.9 1.0 CG D:ASP220 4.3 95.2 1.0 CB D:TYR261 4.4 89.9 1.0 CB D:ASP222 4.4 94.0 1.0 O D:ASN260 4.4 89.1 1.0 N D:ASP222 4.4 94.0 1.0 OD1 D:ASP228 4.5 91.6 1.0 CG D:GLU231 4.5 88.6 1.0 N D:ASP224 4.6 90.3 1.0 CB D:ILE226 4.7 85.7 1.0 C D:ILE226 4.7 85.7 1.0 OD2 D:ASP220 4.7 95.2 1.0 CA D:ASP222 4.9 94.0 1.0 CB D:GLU231 4.9 88.6 1.0 CA D:ASP224 4.9 90.3 1.0 C D:ASP222 5.0 94.0 1.0 N D:TYR261 5.0 89.9 1.0

Calcium binding site 9 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca901 b:84.4 occ:1.00 OD2 E:ASP224 2.3 86.5 1.0 OD2 E:ASP273 2.3 77.2 1.0 O E:GLU263 2.3 83.0 1.0 OD2 E:ASP222 2.4 90.2 1.0 O E:ASN260 2.8 89.4 1.0 OE2 E:GLU231 3.1 89.2 1.0 CG E:ASP224 3.4 86.5 1.0 C E:GLU263 3.4 83.0 1.0 CG E:ASP273 3.5 77.2 1.0 CG E:ASP222 3.6 90.2 1.0 O E:SER264 3.7 78.6 1.0 CD E:GLU231 3.7 89.2 1.0 OE1 E:GLU231 3.8 89.2 1.0 CA E:SER264 3.8 78.6 1.0 OG1 E:THR266 4.0 76.8 1.0 C E:SER264 4.0 78.6 1.0 C E:ASN260 4.0 89.4 1.0 N E:SER264 4.1 78.6 1.0 OD1 E:ASP222 4.2 90.2 1.0 CB E:ASP273 4.2 77.2 1.0 CB E:ASP224 4.2 86.5 1.0 OD1 E:ASP224 4.2 86.5 1.0 OD1 E:ASP273 4.4 77.2 1.0 N E:GLU263 4.5 83.0 1.0 CA E:CA902 4.5 93.5 1.0 CA E:TYR261 4.5 89.1 1.0 CA E:GLU263 4.6 83.0 1.0 OD1 E:ASN260 4.6 89.4 1.0 CB E:ASP222 4.7 90.2 1.0 N E:TYR261 4.7 89.1 1.0 CD1 E:ILE226 4.9 85.5 1.0 C E:TYR261 4.9 89.1 1.0 N E:ASN265 4.9 77.9 1.0

Calcium binding site 10 out of 14 in the Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca902 b:93.5 occ:1.00 O E:ILE226 2.4 85.5 1.0 OD1 E:ASP224 2.4 86.5 1.0 OD1 E:ASP222 2.4 90.2 1.0 OD1 E:ASP220 2.5 91.1 1.0 OE1 E:GLU231 2.8 89.2 1.0 CG E:ASP224 3.2 86.5 1.0 OD2 E:ASP224 3.3 86.5 1.0 CG E:ASP222 3.5 90.2 1.0 C E:ILE226 3.5 85.5 1.0 CG E:ASP220 3.6 91.1 1.0 OD2 E:ASP222 3.8 90.2 1.0 OD1 E:ASP228 3.9 93.1 1.0 CB E:ILE226 4.0 85.5 1.0 CD E:GLU231 4.0 89.2 1.0 CA E:ILE226 4.1 85.5 1.0 OD2 E:ASP220 4.1 91.1 1.0 N E:ILE226 4.2 85.5 1.0 N E:THR221 4.4 92.0 1.0 N E:ASP222 4.4 90.2 1.0 CA E:TYR261 4.4 89.1 1.0 CB E:TYR261 4.5 89.1 1.0 CA E:CA901 4.5 84.4 1.0 C E:PRO227 4.5 92.4 1.0 N E:PRO227 4.6 92.4 1.0 N E:ASP224 4.6 86.5 1.0 O E:TYR261 4.6 89.1 1.0 CB E:ASP224 4.6 86.5 1.0 CG2 E:ILE226 4.6 85.5 1.0 O E:PRO227 4.7 92.4 1.0 OE2 E:GLU231 4.7 89.2 1.0 CA E:ASP220 4.7 91.1 1.0 CB E:ASP220 4.7 91.1 1.0 N E:ASP228 4.8 93.1 1.0 CA E:PRO227 4.8 92.4 1.0 CB E:ASP222 4.8 90.2 1.0 N E:ASN223 4.8 88.9 1.0 C E:TYR261 4.9 89.1 1.0 CB E:GLU231 4.9 89.2 1.0 CG E:GLU231 5.0 89.2 1.0 CG E:ASP228 5.0 93.1 1.0

M.J.Sheedlo, R.M.Mullard. Structure of Clostridioides Difficile Component A (50-463) in Complex with A Cdtb Oligomer To Be Published.