Calcium in PDB 9bcf: Chimeric Protein of Crocodile Allergen Cro P 1.0101 and Gfp

The structure of Chimeric Protein of Crocodile Allergen Cro P 1.0101 and Gfp, PDB code: 9bcf was solved by A.O'malley, T.Ruethers, A.L.Lopata, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.88 / 3.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	158.778, 158.778, 123.498, 90, 90, 90
R / Rfree (%)	19.9 / 23.8

The binding sites of Calcium atom in the Chimeric Protein of Crocodile Allergen Cro P 1.0101 and Gfp (pdb code 9bcf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Chimeric Protein of Crocodile Allergen Cro P 1.0101 and Gfp, PDB code: 9bcf:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Chimeric Protein of Crocodile Allergen Cro P 1.0101 and Gfp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Chimeric Protein of Crocodile Allergen Cro P 1.0101 and Gfp within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:130.4 occ:1.00 O B:LYS96 2.0 119.7 1.0 OD1 B:ASP94 2.0 134.5 1.0 OD1 B:ASP92 2.2 136.4 1.0 OE1 B:GLU101 2.4 139.0 1.0 OD1 B:ASP90 2.5 120.0 1.0 OE2 B:GLU101 2.6 132.5 1.0 CG B:ASP94 2.7 132.5 1.0 CD B:GLU101 2.9 135.3 1.0 CG B:ASP92 3.1 135.4 1.0 OD2 B:ASP94 3.1 137.9 1.0 C B:LYS96 3.2 118.8 1.0 OD2 B:ASP92 3.4 134.8 1.0 CG B:ASP90 3.7 123.2 1.0 N B:ASP94 3.8 124.9 1.0 CB B:ASP94 3.9 129.2 1.0 N B:LYS96 3.9 122.5 1.0 CA B:LYS96 4.1 119.4 1.0 N B:ILE97 4.1 117.6 1.0 CA B:ASP94 4.3 125.7 1.0 CA B:ASP90 4.3 122.6 1.0 CA B:ILE97 4.3 113.5 1.0 N B:GLY93 4.3 128.8 1.0 CG B:GLU101 4.4 132.4 1.0 N B:GLY98 4.4 121.9 1.0 CB B:ASP90 4.5 121.7 1.0 CB B:ASP92 4.5 136.2 1.0 OD2 B:ASP90 4.5 124.5 1.0 CG B:LYS96 4.6 121.7 1.0 C B:ASP94 4.6 118.9 1.0 CB B:LYS96 4.8 118.8 1.0 N B:GLY95 4.8 117.6 1.0 C B:ASP90 4.8 124.5 1.0 N B:ASP92 4.8 130.5 1.0 C B:ILE97 4.8 117.1 1.0 C B:GLY93 4.9 124.6 1.0

Calcium binding site 2 out of 2 in the Chimeric Protein of Crocodile Allergen Cro P 1.0101 and Gfp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Chimeric Protein of Crocodile Allergen Cro P 1.0101 and Gfp within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca402 b:105.2 occ:1.00 O B:PHE57 2.1 107.3 1.0 OD1 B:ASP53 2.2 120.9 1.0 OE1 B:GLU62 2.2 100.2 1.0 OD1 B:ASP51 2.3 110.7 1.0 OG B:SER55 2.3 106.2 1.0 OE1 B:GLU59 2.4 120.7 1.0 CD B:GLU62 2.9 103.0 1.0 OE2 B:GLU62 3.0 98.9 1.0 CG B:ASP53 3.2 118.9 1.0 C B:PHE57 3.3 108.8 1.0 CD B:GLU59 3.3 118.3 1.0 CG B:ASP51 3.3 104.4 1.0 CB B:SER55 3.5 110.8 1.0 OE2 B:GLU59 3.5 117.4 1.0 OD2 B:ASP53 3.7 123.9 1.0 N B:SER55 4.0 111.7 1.0 CA B:ASP51 4.0 94.5 1.0 CA B:ILE58 4.1 106.5 1.0 N B:ILE58 4.1 105.9 1.0 CB B:ASP51 4.1 97.4 1.0 OD2 B:ASP51 4.2 109.5 1.0 N B:ASP53 4.2 105.4 1.0 N B:PHE57 4.3 114.5 1.0 C B:ASP51 4.3 93.1 1.0 CA B:SER55 4.3 112.3 1.0 N B:GLU59 4.3 111.4 1.0 CG B:GLU62 4.3 104.0 1.0 CA B:PHE57 4.3 112.9 1.0 CB B:ASP53 4.4 116.3 1.0 N B:GLN52 4.5 92.7 1.0 C B:ILE58 4.7 111.0 1.0 CG B:GLU59 4.7 121.5 1.0 CA B:ASP53 4.7 111.6 1.0 N B:LYS54 4.7 112.5 1.0 O B:ASP51 4.7 93.0 1.0 C B:ASP53 4.8 112.5 1.0 C B:SER55 4.9 112.5 1.0 CB B:GLU62 5.0 100.2 1.0

A.O'malley, M.Chruszcz. Crystal Structure of Cod Allergen Gad M 1.0201 Coordinating Lanthanum Protein Sci. 2024.
ISSN: ESSN 1469-896X
DOI: 10.1002/PRO.522614