Calcium in PDB 9cm2: Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution

All present enzymatic activity of Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution:
3.4.21.6;

The binding sites of Calcium atom in the Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution (pdb code 9cm2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution, PDB code: 9cm2:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ Z:Ca501 b:14.3 occ:1.00 OE22 Z:CGU29 2.4 10.3 1.0 OE12 Z:CGU29 2.5 17.4 1.0 OE12 Z:CGU7 2.5 13.2 1.0 OE22 Z:CGU7 2.5 8.1 1.0 CD1 Z:CGU7 2.7 13.1 1.0 CD2 Z:CGU29 2.9 12.2 1.0 OE11 Z:CGU7 3.1 8.1 1.0 CD1 Z:CGU29 3.2 16.8 1.0 CD2 Z:CGU7 3.4 9.3 1.0 OE21 Z:CGU29 3.6 14.5 1.0 CG Z:CGU7 3.6 10.9 1.0 CG Z:CGU29 3.7 13.0 1.0 OE12 Z:CGU26 4.0 10.3 1.0 OE11 Z:CGU29 4.1 20.6 1.0 OE21 Z:CGU7 4.4 13.6 1.0 O L:THR431 4.8 238.0 1.0 CB Z:CGU29 4.9 11.0 1.0 CB Z:CGU7 4.9 13.2 1.0

Calcium binding site 2 out of 4 in the Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ Z:Ca502 b:9.4 occ:1.00 O Z:CGU26 2.5 17.8 1.0 CA Z:CA503 2.5 12.6 1.0 OE21 Z:CGU29 2.6 14.5 1.0 CB Z:CGU29 2.9 11.0 1.0 C Z:CGU26 3.0 16.6 1.0 CA Z:CGU26 3.0 15.5 1.0 CG2 Z:VAL30 3.0 9.3 1.0 N Z:VAL30 3.3 16.5 1.0 CD2 Z:CGU29 3.3 12.2 1.0 OE22 Z:CGU16 3.6 9.0 1.0 CG Z:CGU29 3.6 13.0 1.0 CB Z:CGU26 3.7 14.9 1.0 CA Z:CGU29 3.7 13.8 1.0 N Z:CGU29 3.9 14.6 1.0 C Z:CGU29 3.9 16.1 1.0 O Z:CGU25 4.0 20.8 1.0 N Z:ALA27 4.1 15.4 1.0 CB Z:VAL30 4.2 15.8 1.0 CA Z:VAL30 4.2 16.6 1.0 N Z:CGU26 4.2 18.7 1.0 OE22 Z:CGU29 4.4 10.3 1.0 OE12 Z:CGU26 4.5 10.3 1.0 OE12 Z:CGU16 4.5 12.4 1.0 C Z:CGU25 4.5 16.8 1.0 CD2 Z:CGU16 4.7 8.4 1.0 CG Z:CGU26 4.7 13.6 1.0 CA Z:ALA27 4.8 9.7 1.0 N Z:ARG28 4.9 13.4 1.0 CD1 Z:CGU26 4.9 14.3 1.0

Calcium binding site 3 out of 4 in the Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ Z:Ca503 b:12.6 occ:1.00 OE12 Z:CGU16 2.4 12.4 1.0 OE21 Z:CGU29 2.5 14.5 1.0 CA Z:CA502 2.5 9.4 1.0 OE12 Z:CGU26 2.6 10.3 1.0 OE22 Z:CGU16 2.6 9.0 1.0 CD1 Z:CGU16 2.8 12.0 1.0 CB Z:CGU26 2.8 14.9 1.0 CB Z:CGU16 3.0 11.1 1.0 CD1 Z:CGU26 3.0 14.3 1.0 CG Z:CGU16 3.0 7.4 1.0 CD2 Z:CGU16 3.1 8.4 1.0 CA Z:CGU26 3.2 15.5 1.0 CG Z:CGU26 3.4 13.6 1.0 CD2 Z:CGU29 3.6 12.2 1.0 O Z:CGU26 3.7 17.8 1.0 OE11 Z:CGU16 3.7 12.7 1.0 OE11 Z:CGU26 3.7 11.8 1.0 C Z:CGU26 3.9 16.6 1.0 OE22 Z:CGU29 4.1 10.3 1.0 OE21 Z:CGU16 4.3 4.8 1.0 OE11 Z:CGU7 4.4 8.1 1.0 CA Z:CGU16 4.4 12.2 1.0 N Z:CGU26 4.5 18.7 1.0 CB Z:CGU29 4.6 11.0 1.0 CG Z:CGU29 4.7 13.0 1.0 CD2 Z:CGU26 4.8 11.2 1.0 N Z:CYS17 4.8 15.5 1.0 CG2 Z:VAL30 4.9 9.3 1.0 N Z:CGU16 5.0 11.8 1.0

Calcium binding site 4 out of 4 in the Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Model Derived From Localized Reconstruction of Human Adenovirus 6-Hexon-Fx Complex at 4.3A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ Z:Ca504 b:12.1 occ:1.00 OE11 Z:CGU6 2.5 22.5 1.0 O Z:ARG15 2.6 10.5 1.0 CD1 Z:CGU6 3.3 17.6 1.0 C Z:ARG15 3.4 10.5 1.0 OE12 Z:CGU6 3.4 15.9 1.0 CA Z:ARG15 4.1 11.2 1.0 N Z:CGU16 4.3 11.8 1.0 CA Z:CGU16 4.5 12.2 1.0 CB Z:ARG15 4.6 5.1 1.0 CG Z:CGU6 4.6 18.2 1.0 OE21 Z:CGU20 5.0 12.8 1.0

H.E.Mudrick, S.C.Lu, J.Bhandari, M.E.Barry, J.R.Hemsath, F.G.M.Andres, O.X.Ma, M.A.Barry, V.S.Reddy. Structure-Derived Insights From Blood Factors Binding to the Surfaces of Different Adenoviruses. Nat Commun V. 15 9768 2024.
ISSN: ESSN 2041-1723
PubMed: 39528527
DOI: 10.1038/S41467-024-54049-9