Calcium in PDB 9enp: Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State with 1-Bp Dna Mismatch

All present enzymatic activity of Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State with 1-Bp Dna Mismatch:
2.7.7.7; 3.1.26.4;

The binding sites of Calcium atom in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State with 1-Bp Dna Mismatch (pdb code 9enp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State with 1-Bp Dna Mismatch, PDB code: 9enp:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State with 1-Bp Dna Mismatch


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State with 1-Bp Dna Mismatch within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1301 b:134.1 occ:1.00 OD2 A:ASP368 2.3 74.6 1.0 O A:ILE369 2.4 42.6 1.0 O A:HOH1403 2.7 107.2 1.0 CG A:ASP368 3.1 65.8 1.0 OE1 A:GLU370 3.2 87.6 1.0 OD1 A:ASP368 3.3 81.8 1.0 C5' C:AS23 3.4 202.1 1.0 C A:ILE369 3.6 41.7 1.0 C3' C:AS23 3.8 201.7 1.0 CA A:CA1302 3.9 75.2 1.0 C4' C:AS23 3.9 201.3 1.0 OD2 A:ASP581 4.2 106.2 1.0 N A:ILE369 4.2 33.2 1.0 O A:HOH1404 4.3 86.4 1.0 CD A:GLU370 4.3 88.9 1.0 N A:GLU370 4.4 44.1 1.0 CB A:ASP368 4.5 47.4 1.0 O3' C:AS23 4.5 184.2 1.0 OD2 A:ASP471 4.5 57.2 1.0 S2P C:AS23 4.5 223.5 1.0 CA A:ILE369 4.5 38.2 1.0 O5' C:AS23 4.5 206.1 1.0 CA A:GLU370 4.6 44.8 1.0 C A:ASP368 4.7 35.2 1.0 O A:HOH1401 4.8 56.7 0.5 OE2 A:GLU370 4.9 100.4 1.0 P C:AS23 4.9 221.0 1.0 OP1 C:AS23 5.0 224.7 1.0 C2' C:AS23 5.0 212.0 1.0 CA A:ASP368 5.0 38.8 1.0

Calcium binding site 2 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State with 1-Bp Dna Mismatch


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State with 1-Bp Dna Mismatch within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1302 b:75.2 occ:1.00 OD1 A:ASP368 2.2 81.8 1.0 S2P C:AS23 2.5 223.5 1.0 O A:TYR465 2.6 45.0 1.0 OD1 A:ASP471 2.7 61.4 1.0 OD2 A:ASP471 2.7 57.2 1.0 O A:HOH1404 2.8 86.4 1.0 CG A:ASP471 3.1 51.4 1.0 O A:HOH1402 3.2 37.2 1.0 CG A:ASP368 3.3 65.8 1.0 C A:TYR465 3.8 41.8 1.0 CA A:CA1301 3.9 134.1 1.0 OD2 A:ASP368 4.0 74.6 1.0 P C:AS23 4.3 221.0 1.0 CB A:ASP368 4.4 47.4 1.0 O A:HOH1403 4.4 107.2 1.0 N A:TYR465 4.5 44.0 1.0 CA A:ASP368 4.6 38.8 1.0 CB A:ASP471 4.6 46.2 1.0 CA A:TYR465 4.6 45.0 1.0 C A:ASN466 4.7 44.4 1.0 CB A:ASN466 4.8 62.8 1.0 N A:ASN466 4.8 44.4 1.0 OP1 C:AS23 4.8 224.7 1.0 N A:ILE369 4.8 33.2 1.0 CG2 A:ILE467 4.8 45.2 1.0 N A:ILE467 4.9 46.3 1.0 CB A:TYR465 4.9 56.6 1.0 C5' C:AS23 4.9 202.1 1.0 CA A:ASN466 4.9 50.1 1.0 O5' C:AS23 5.0 206.1 1.0

E.Gustavsson, K.Grunewald, P.Elias, B.M.Hallberg. Dynamics of the Herpes Simplex Virus Dna Polymerase Holoenzyme During Dna Synthesis and Proof-Reading Revealed By Cryo-Em To Be Published.