Calcium in PDB 9enq: Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site with 1-Bp Dna Mismatch

All present enzymatic activity of Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site with 1-Bp Dna Mismatch:
2.7.7.7; 3.1.26.4;

The binding sites of Calcium atom in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site with 1-Bp Dna Mismatch (pdb code 9enq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site with 1-Bp Dna Mismatch, PDB code: 9enq:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site with 1-Bp Dna Mismatch


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site with 1-Bp Dna Mismatch within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1301 b:51.8 occ:1.00 OD1 A:ASP368 2.3 58.0 1.0 O A:TYR465 2.4 31.4 1.0 OD1 A:ASP471 2.6 38.5 1.0 O A:HOH1404 2.7 28.3 1.0 OD2 A:ASP471 2.7 36.3 1.0 O A:HOH1403 2.8 54.0 1.0 S2P C:AS23 2.9 142.7 1.0 CG A:ASP471 3.0 33.3 1.0 CG A:ASP368 3.6 45.6 1.0 C A:TYR465 3.6 27.3 1.0 CA A:CA1302 4.2 97.1 1.0 CB A:ASP368 4.3 34.5 1.0 N A:TYR465 4.4 27.9 1.0 CA A:TYR465 4.5 28.4 1.0 OD2 A:ASP368 4.5 52.0 1.0 CA A:ASP368 4.5 29.0 1.0 CB A:ASP471 4.5 31.1 1.0 C A:ASN466 4.5 30.1 1.0 CB A:ASN466 4.6 39.8 1.0 N A:ASN466 4.6 27.7 1.0 N A:ILE467 4.7 29.0 1.0 CG2 A:ILE467 4.7 29.7 1.0 CB A:TYR465 4.8 32.2 1.0 CA A:ASN466 4.8 32.1 1.0 P C:AS23 4.8 149.8 1.0 O A:ASN466 4.9 31.7 1.0 N A:ILE369 4.9 24.3 1.0 O A:PHE367 4.9 26.7 1.0 O A:HOH1402 5.0 103.5 1.0

Calcium binding site 2 out of 2 in the Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site with 1-Bp Dna Mismatch


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Hsv-1 Dna Polymerase-Processivity Factor Complex in Exonuclease State Active Site with 1-Bp Dna Mismatch within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1302 b:97.1 occ:1.00 O A:HOH1402 2.3 103.5 1.0 O A:ILE369 2.5 28.5 1.0 OD2 A:ASP368 2.5 52.0 1.0 OD1 A:ASP368 2.9 58.0 1.0 CG A:ASP368 3.0 45.6 1.0 OE1 A:GLU370 3.2 60.7 1.0 C5' C:AS23 3.7 140.5 1.0 C A:ILE369 3.7 26.1 1.0 O A:HOH1403 4.1 54.0 1.0 C3' C:AS23 4.1 142.1 1.0 C4' C:AS23 4.1 143.6 1.0 CD A:GLU370 4.1 65.0 1.0 CA A:CA1301 4.2 51.8 1.0 S2P C:AS23 4.2 142.7 1.0 OD2 A:ASP581 4.2 85.4 1.0 N A:ILE369 4.4 24.3 1.0 O3' C:AS23 4.4 129.4 1.0 CB A:ASP368 4.5 34.5 1.0 N A:GLU370 4.6 27.8 1.0 O5' C:AS23 4.6 141.8 1.0 CA A:GLU370 4.6 30.6 1.0 OE2 A:GLU370 4.6 73.2 1.0 OD2 A:ASP471 4.6 36.3 1.0 CA A:ILE369 4.7 24.5 1.0 C A:ASP368 4.8 25.8 1.0 P C:AS23 4.9 149.8 1.0

E.Gustavsson, K.Grunewald, P.Elias, B.M.Hallberg. Dynamics of the Herpes Simplex Virus Dna Polymerase Holoenzyme During Dna Synthesis and Proof-Reading Revealed By Cryo-Em To Be Published.