Calcium in PDB 9jje: Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+

The binding sites of Calcium atom in the Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+ (pdb code 9jje). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+, PDB code: 9jje:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca4000 b:21.3 occ:1.00 OE1 A:GLN896 2.5 25.2 1.0 OD2 A:ASP921 2.5 18.9 1.0 OD1 A:ASN918 2.6 21.2 1.0 OE2 A:GLU893 2.6 23.4 1.0 OE1 A:GLU893 2.6 23.4 1.0 CD A:GLU893 3.0 23.4 1.0 CD A:GLN896 3.5 25.2 1.0 CG A:ASP921 3.6 18.9 1.0 NH2 A:ARG960 3.7 19.5 1.0 CG A:ASN918 3.8 21.2 1.0 NE2 A:GLN896 3.9 25.2 1.0 OE2 A:GLU1110 4.0 22.5 1.0 CB A:ASP921 4.3 18.9 1.0 NE A:ARG960 4.5 19.5 1.0 CG A:GLU893 4.5 23.4 1.0 OH A:TYR912 4.5 24.9 1.0 CA A:ASN918 4.5 21.2 1.0 OE1 A:GLU1110 4.5 22.5 1.0 OD1 A:ASP921 4.5 18.9 1.0 CZ A:ARG960 4.5 19.5 1.0 ND2 A:ASN918 4.6 21.2 1.0 CD A:GLU1110 4.7 22.5 1.0 O A:TRP917 4.7 20.3 1.0 CB A:ASN918 4.7 21.2 1.0 N A:ASN918 4.8 21.2 1.0 CE1 A:TYR912 4.8 24.9 1.0 C A:TRP917 4.9 20.3 1.0 CG A:GLN896 4.9 25.2 1.0

Calcium binding site 2 out of 4 in the Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca4000 b:21.3 occ:1.00 OE1 B:GLN896 2.5 25.2 1.0 OD2 B:ASP921 2.5 18.9 1.0 OD1 B:ASN918 2.6 21.2 1.0 OE2 B:GLU893 2.6 23.4 1.0 OE1 B:GLU893 2.6 23.4 1.0 CD B:GLU893 3.0 23.4 1.0 CD B:GLN896 3.5 25.2 1.0 CG B:ASP921 3.6 18.9 1.0 NH2 B:ARG960 3.7 19.5 1.0 CG B:ASN918 3.8 21.2 1.0 NE2 B:GLN896 3.9 25.2 1.0 OE2 B:GLU1110 4.0 22.5 1.0 CB B:ASP921 4.3 18.9 1.0 NE B:ARG960 4.5 19.5 1.0 CG B:GLU893 4.5 23.4 1.0 OH B:TYR912 4.5 24.9 1.0 CA B:ASN918 4.5 21.2 1.0 OE1 B:GLU1110 4.5 22.5 1.0 OD1 B:ASP921 4.5 18.9 1.0 CZ B:ARG960 4.5 19.5 1.0 ND2 B:ASN918 4.6 21.2 1.0 CD B:GLU1110 4.7 22.5 1.0 O B:TRP917 4.7 20.3 1.0 CB B:ASN918 4.7 21.2 1.0 N B:ASN918 4.8 21.2 1.0 CE1 B:TYR912 4.8 24.9 1.0 C B:TRP917 4.9 20.3 1.0 CG B:GLN896 4.9 25.2 1.0

Calcium binding site 3 out of 4 in the Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca4000 b:21.3 occ:1.00 OE1 C:GLN896 2.5 25.2 1.0 OD2 C:ASP921 2.5 18.9 1.0 OD1 C:ASN918 2.6 21.2 1.0 OE2 C:GLU893 2.6 23.4 1.0 OE1 C:GLU893 2.6 23.4 1.0 CD C:GLU893 3.0 23.4 1.0 CD C:GLN896 3.5 25.2 1.0 CG C:ASP921 3.6 18.9 1.0 NH2 C:ARG960 3.7 19.5 1.0 CG C:ASN918 3.8 21.2 1.0 NE2 C:GLN896 3.9 25.2 1.0 OE2 C:GLU1110 4.0 22.5 1.0 CB C:ASP921 4.3 18.9 1.0 NE C:ARG960 4.5 19.5 1.0 CG C:GLU893 4.5 23.4 1.0 OH C:TYR912 4.5 24.9 1.0 CA C:ASN918 4.5 21.2 1.0 OE1 C:GLU1110 4.5 22.5 1.0 OD1 C:ASP921 4.5 18.9 1.0 CZ C:ARG960 4.5 19.5 1.0 ND2 C:ASN918 4.6 21.2 1.0 CD C:GLU1110 4.7 22.5 1.0 O C:TRP917 4.7 20.3 1.0 CB C:ASN918 4.7 21.2 1.0 N C:ASN918 4.8 21.2 1.0 CE1 C:TYR912 4.8 24.9 1.0 C C:TRP917 4.9 20.3 1.0 CG C:GLN896 4.9 25.2 1.0

Calcium binding site 4 out of 4 in the Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Nematostella Vectensis TRPM2 Tetramer in Complex with Adprp/CA2+ within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca4000 b:21.3 occ:1.00 OE1 D:GLN896 2.5 25.2 1.0 OD2 D:ASP921 2.5 18.9 1.0 OD1 D:ASN918 2.6 21.2 1.0 OE2 D:GLU893 2.6 23.4 1.0 OE1 D:GLU893 2.6 23.4 1.0 CD D:GLU893 3.0 23.4 1.0 CD D:GLN896 3.5 25.2 1.0 CG D:ASP921 3.6 18.9 1.0 NH2 D:ARG960 3.7 19.5 1.0 CG D:ASN918 3.8 21.2 1.0 NE2 D:GLN896 3.9 25.2 1.0 OE2 D:GLU1110 4.0 22.5 1.0 CB D:ASP921 4.3 18.9 1.0 NE D:ARG960 4.5 19.5 1.0 CG D:GLU893 4.5 23.4 1.0 OH D:TYR912 4.5 24.9 1.0 CA D:ASN918 4.5 21.2 1.0 OE1 D:GLU1110 4.5 22.5 1.0 OD1 D:ASP921 4.5 18.9 1.0 CZ D:ARG960 4.5 19.5 1.0 ND2 D:ASN918 4.6 21.2 1.0 CD D:GLU1110 4.7 22.5 1.0 O D:TRP917 4.7 20.3 1.0 CB D:ASN918 4.7 21.2 1.0 N D:ASN918 4.8 21.2 1.0 CE1 D:TYR912 4.8 24.9 1.0 C D:TRP917 4.9 20.3 1.0 CG D:GLN896 4.9 25.2 1.0

B.Toth, Y.Jiang, A.Szollosi, Z.Zhang, L.Csanady. A Conserved Mechanism Couples Cytosolic Domain Movements to Pore Gating in the TRPM2 Channel Proc.Natl.Acad.Sci.Usa 2024.
ISSN: ESSN 1091-6490