Calcium in PDB 8yj9: Crystallization Studies of Concanavalin A in-Complex with D-Arabinose

The structure of Crystallization Studies of Concanavalin A in-Complex with D-Arabinose, PDB code: 8yj9 was solved by S.Rasheed, R.Arif, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.90 / 2.20
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.882, 86.627, 88.68, 90, 90, 90
R / Rfree (%)	16.9 / 22.1

The structure of Crystallization Studies of Concanavalin A in-Complex with D-Arabinose also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Calcium atom in the Crystallization Studies of Concanavalin A in-Complex with D-Arabinose (pdb code 8yj9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystallization Studies of Concanavalin A in-Complex with D-Arabinose, PDB code: 8yj9:

Calcium binding site 1 out of 1 in the Crystallization Studies of Concanavalin A in-Complex with D-Arabinose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystallization Studies of Concanavalin A in-Complex with D-Arabinose within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca305 b:8.8 occ:1.00 O A:HOH454 2.3 8.1 1.0 OD2 A:ASP19 2.4 12.8 1.0 O A:TYR12 2.4 11.0 1.0 OD2 A:ASP10 2.4 7.8 1.0 OD1 A:ASP10 2.4 7.1 1.0 O A:HOH462 2.4 8.9 1.0 OD1 A:ASN14 2.4 13.1 1.0 CG A:ASP10 2.7 7.5 1.0 CG A:ASP19 3.5 13.5 1.0 CG A:ASN14 3.6 13.2 1.0 C A:TYR12 3.6 10.9 1.0 N A:ASN14 3.9 13.8 1.0 OD1 A:ASP19 4.0 12.6 1.0 MN A:MN306 4.1 12.4 1.0 CB A:ASN14 4.1 13.8 1.0 CB A:ASP10 4.2 7.1 1.0 CA A:TYR12 4.4 10.4 1.0 N A:TYR12 4.4 10.0 1.0 O A:HOH426 4.5 9.3 1.0 N A:PRO13 4.5 12.7 1.0 CE1 A:HIS24 4.6 12.0 1.0 CA A:PRO13 4.6 13.7 1.0 CB A:TYR12 4.6 10.8 1.0 O A:ASP208 4.6 8.2 1.0 C A:PRO13 4.6 13.9 1.0 ND2 A:ASN14 4.6 13.0 1.0 CA A:ASN14 4.7 13.8 1.0 CB A:ASP19 4.7 14.2 1.0 OD1 A:ASP208 4.8 9.8 1.0 O A:ARG228 4.8 11.1 1.0 CB A:ARG228 4.9 11.8 1.0 CA A:ARG228 4.9 11.3 1.0 NE2 A:HIS24 5.0 12.0 1.0

S.Rasheed, R.Arif. Crystallization Studies of Concanavalin A in-Complex with D-Arabinose To Be Published.