Calcium in PDB 8zlw: Crystal Structure of Rdgc Iq Motif/Dcam Complex

All present enzymatic activity of Crystal Structure of Rdgc Iq Motif/Dcam Complex:
3.1.3.16;

The structure of Crystal Structure of Rdgc Iq Motif/Dcam Complex, PDB code: 8zlw was solved by J.Liu, Y.Z.Ding, J.C.Li, W.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.26 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.664, 61.59, 88.002, 90, 94.17, 90
R / Rfree (%)	21.6 / 25.4

The binding sites of Calcium atom in the Crystal Structure of Rdgc Iq Motif/Dcam Complex (pdb code 8zlw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Rdgc Iq Motif/Dcam Complex, PDB code: 8zlw:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of Rdgc Iq Motif/Dcam Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Rdgc Iq Motif/Dcam Complex within 5.0Å range: probe atom residue distance (Å) B Occ N:Ca201 b:39.7 occ:1.00 O N:GLN133 2.3 37.0 1.0 OD1 N:ASP127 2.3 31.0 1.0 OD1 N:ASP129 2.4 44.0 1.0 OD1 N:ASP131 2.4 44.2 1.0 OE2 N:GLU138 2.4 42.0 1.0 OE1 N:GLU138 2.6 36.8 1.0 CD N:GLU138 2.8 38.8 1.0 CG N:ASP129 3.3 44.4 1.0 CG N:ASP131 3.3 45.2 1.0 CG N:ASP127 3.4 35.8 1.0 C N:GLN133 3.5 35.8 1.0 OD2 N:ASP129 3.6 46.4 1.0 OD2 N:ASP131 3.7 42.5 1.0 N N:GLN133 4.1 35.3 1.0 CA N:ASP127 4.2 36.1 1.0 OD2 N:ASP127 4.2 34.7 1.0 N N:ASP131 4.2 44.7 1.0 CB N:ASP127 4.2 35.9 1.0 N N:ASP129 4.3 44.5 1.0 CA N:VAL134 4.4 33.3 1.0 N N:VAL134 4.4 33.6 1.0 CG N:GLU138 4.4 33.3 1.0 CB N:ASP131 4.4 42.9 1.0 N N:ASN135 4.4 30.1 1.0 CA N:GLN133 4.4 38.7 1.0 C N:ASP127 4.5 41.4 1.0 N N:GLY130 4.5 40.1 1.0 CB N:ASP129 4.5 44.2 1.0 N N:ILE128 4.6 42.5 1.0 N N:GLY132 4.6 47.8 1.0 CA N:ASP131 4.7 45.2 1.0 CA N:ASP129 4.7 43.6 1.0 C N:ASP129 4.8 44.5 1.0 C N:VAL134 4.9 31.0 1.0 CG N:ASN135 4.9 35.3 1.0 C N:ASP131 4.9 44.5 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of Rdgc Iq Motif/Dcam Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Rdgc Iq Motif/Dcam Complex within 5.0Å range: probe atom residue distance (Å) B Occ N:Ca202 b:52.9 occ:1.00 O N:THR60 2.3 55.7 1.0 OD1 N:ASP54 2.4 59.7 1.0 OD1 N:ASN58 2.4 64.8 1.0 OE1 N:GLU65 2.6 41.1 1.0 OE2 N:GLU65 2.6 47.1 1.0 CD N:GLU65 3.0 47.0 1.0 CB N:ASP56 3.2 62.6 1.0 CG N:ASN58 3.3 61.0 1.0 C N:THR60 3.5 56.2 1.0 CG N:ASP54 3.6 58.4 1.0 ND2 N:ASN58 3.6 56.7 1.0 OD2 N:ASP56 3.7 66.3 1.0 CG N:ASP56 3.8 58.4 1.0 OD2 N:ASP62 3.9 64.7 1.0 CB N:ASP54 4.1 61.2 1.0 N N:ASP56 4.2 61.5 1.0 OG1 N:THR60 4.2 55.2 1.0 N N:ASP62 4.3 44.3 1.0 N N:ILE61 4.3 51.0 1.0 CA N:ASP56 4.3 63.2 1.0 CA N:ILE61 4.3 46.8 1.0 CA N:ASP54 4.3 62.7 1.0 N N:THR60 4.4 58.4 1.0 O N:ASN58 4.4 76.2 1.0 CA N:THR60 4.4 57.6 1.0 CG N:GLU65 4.5 44.0 1.0 CG N:ASP62 4.6 51.6 1.0 OD2 N:ASP54 4.6 57.6 1.0 C N:ILE61 4.6 44.4 1.0 CB N:ASN58 4.7 63.2 1.0 C N:ASP54 4.8 65.0 1.0 N N:ALA55 4.9 60.7 1.0 C N:ASN58 4.9 63.2 1.0 N N:ASN58 4.9 57.2 1.0 OD1 N:ASP56 4.9 65.2 1.0 CB N:THR60 4.9 61.1 1.0 N N:GLY57 5.0 65.3 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of Rdgc Iq Motif/Dcam Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Rdgc Iq Motif/Dcam Complex within 5.0Å range: probe atom residue distance (Å) B Occ N:Ca203 b:46.1 occ:1.00 O N:THR24 2.3 50.0 1.0 OE1 N:GLU29 2.4 30.6 1.0 OD1 N:ASP18 2.4 47.1 1.0 OD1 N:ASP22 2.4 50.1 1.0 OD1 N:ASP20 2.5 51.4 1.0 OE2 N:GLU29 2.5 35.5 1.0 CD N:GLU29 2.7 35.9 1.0 CG N:ASP20 3.3 51.0 1.0 CG N:ASP22 3.4 57.5 1.0 OD2 N:ASP20 3.5 50.5 1.0 C N:THR24 3.5 50.0 1.0 CG N:ASP18 3.5 47.0 1.0 OG1 N:THR24 3.8 52.8 1.0 OD2 N:ASP22 3.9 48.6 1.0 CA N:ASP18 4.1 45.9 1.0 CG N:GLU29 4.2 33.5 1.0 N N:THR24 4.3 47.3 1.0 CB N:ASP18 4.3 47.3 1.0 CA N:THR24 4.4 52.0 1.0 OD2 N:ASP18 4.4 45.2 1.0 N N:ASP22 4.4 52.3 1.0 N N:ILE25 4.4 44.2 1.0 CA N:ILE25 4.5 41.5 1.0 CB N:ASP22 4.5 56.0 1.0 C N:ASP18 4.5 42.9 1.0 N N:THR26 4.7 41.4 1.0 N N:ASP20 4.7 48.8 1.0 CG2 N:THR26 4.7 45.6 1.0 CB N:THR24 4.7 60.9 1.0 CB N:ASP20 4.7 47.7 1.0 N N:LYS19 4.8 44.0 1.0 N N:GLY21 4.8 52.2 1.0 CA N:ASP22 4.9 53.5 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of Rdgc Iq Motif/Dcam Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Rdgc Iq Motif/Dcam Complex within 5.0Å range: probe atom residue distance (Å) B Occ N:Ca204 b:30.0 occ:1.00 OD2 N:ASP93 3.0 44.9 1.0 OD1 N:ASN95 3.2 41.4 1.0 ND2 N:ASN95 3.2 40.4 1.0 OE1 N:GLU102 3.4 39.2 1.0 O N:PHE97 3.4 43.2 1.0 CG N:ASN95 3.4 45.3 1.0 OD1 N:ASP93 3.5 43.1 1.0 OE2 N:GLU102 3.5 40.4 1.0 CD N:GLU102 3.5 40.5 1.0 CG N:ASP93 3.6 43.9 1.0 OG N:SER99 3.9 34.5 1.0 OE1 N:GLN133 4.1 48.1 1.0 CB N:SER99 4.3 31.3 1.0 C N:PHE97 4.6 37.6 1.0 CG N:GLU102 4.6 36.7 1.0 OD1 N:ASP91 4.6 31.3 1.0 N N:SER99 4.6 34.2 1.0 CB N:ASN95 4.8 45.8 1.0

J.Liu, Y.Z.Ding, J.C.Li, W.Liu. Crystal Structure of Rdgc Iq Motif/Dcam Complex To Be Published.