Calcium in PDB 9ev8: Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
Calcium Binding Sites:
The binding sites of Calcium atom in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
(pdb code 9ev8). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium, PDB code: 9ev8:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 1 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca701
b:30.6
occ:1.00
|
OD1
|
A:ASP123
|
2.0
|
36.9
|
1.0
|
|
OD1
|
A:ASP124
|
2.2
|
36.8
|
1.0
|
|
OD1
|
A:ASP76
|
2.6
|
35.7
|
1.0
|
|
O
|
A:ASP123
|
2.7
|
36.9
|
1.0
|
|
O
|
A:PRO77
|
3.0
|
32.8
|
1.0
|
|
O
|
A:TYR129
|
3.1
|
34.3
|
1.0
|
|
CG
|
A:ASP123
|
3.2
|
36.9
|
1.0
|
|
CG
|
A:ASP124
|
3.3
|
36.8
|
1.0
|
|
C
|
A:ASP123
|
3.3
|
36.9
|
1.0
|
|
CG
|
A:ASP76
|
3.5
|
35.7
|
1.0
|
|
OD2
|
A:ASP124
|
3.9
|
36.8
|
1.0
|
|
CA
|
A:ASP123
|
3.9
|
36.9
|
1.0
|
|
CG2
|
A:THR150
|
4.0
|
36.9
|
1.0
|
|
CB
|
A:ASP123
|
4.0
|
36.9
|
1.0
|
|
OD2
|
A:ASP123
|
4.1
|
36.9
|
1.0
|
|
N
|
A:ASP124
|
4.1
|
36.8
|
1.0
|
|
C
|
A:TYR129
|
4.1
|
34.3
|
1.0
|
|
OD2
|
A:ASP76
|
4.1
|
35.7
|
1.0
|
|
C
|
A:PRO77
|
4.1
|
32.8
|
1.0
|
|
CA
|
A:ASP124
|
4.3
|
36.8
|
1.0
|
|
CB
|
A:TYR129
|
4.3
|
34.3
|
1.0
|
|
N
|
A:PRO77
|
4.4
|
32.8
|
1.0
|
|
CB
|
A:ASP124
|
4.4
|
36.8
|
1.0
|
|
C
|
A:ASP76
|
4.4
|
35.7
|
1.0
|
|
CA
|
A:TYR129
|
4.5
|
34.3
|
1.0
|
|
CB
|
A:ASP76
|
4.6
|
35.7
|
1.0
|
|
O
|
A:ASP76
|
4.6
|
35.7
|
1.0
|
|
CD
|
A:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
A:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
A:ASP76
|
4.9
|
35.7
|
1.0
|
|
CB
|
A:THR150
|
4.9
|
36.9
|
1.0
|
|
Calcium binding site 2 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 2 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca707
b:38.1
occ:1.00
|
O
|
B:HOH808
|
2.1
|
50.0
|
1.0
|
|
OE1
|
A:GLU347
|
2.3
|
45.2
|
1.0
|
|
O
|
A:PHE436
|
2.5
|
42.3
|
1.0
|
|
O
|
B:LEU477
|
2.5
|
46.6
|
1.0
|
|
O
|
B:HOH805
|
2.6
|
50.0
|
1.0
|
|
O
|
A:PRO434
|
2.6
|
43.6
|
1.0
|
|
OE2
|
A:GLU347
|
2.8
|
45.2
|
1.0
|
|
CD
|
A:GLU347
|
2.8
|
45.2
|
1.0
|
|
C
|
A:PHE436
|
3.5
|
42.3
|
1.0
|
|
C
|
A:PRO434
|
3.6
|
43.6
|
1.0
|
|
C
|
B:LEU477
|
3.7
|
46.6
|
1.0
|
|
N
|
A:PHE436
|
3.7
|
42.3
|
1.0
|
|
CA
|
A:PHE436
|
4.0
|
42.3
|
1.0
|
|
C
|
A:ASP435
|
4.2
|
44.6
|
1.0
|
|
CA
|
A:PRO434
|
4.2
|
43.6
|
1.0
|
|
CB
|
A:PHE436
|
4.3
|
42.3
|
1.0
|
|
CG
|
A:GLU347
|
4.3
|
45.2
|
1.0
|
|
OE2
|
B:GLU480
|
4.4
|
48.7
|
1.0
|
|
CA
|
B:GLY478
|
4.4
|
45.9
|
1.0
|
|
N
|
A:ASP435
|
4.5
|
44.6
|
1.0
|
|
N
|
B:GLY478
|
4.5
|
45.9
|
1.0
|
|
CA
|
A:ASP435
|
4.6
|
44.6
|
1.0
|
|
O
|
B:GLU479
|
4.7
|
47.6
|
1.0
|
|
N
|
B:LEU477
|
4.7
|
46.6
|
1.0
|
|
CB
|
B:GLN476
|
4.7
|
50.2
|
1.0
|
|
N
|
A:ASP437
|
4.7
|
43.0
|
1.0
|
|
CA
|
B:LEU477
|
4.7
|
46.6
|
1.0
|
|
O
|
A:HOH803
|
4.7
|
50.0
|
1.0
|
|
O
|
A:ASP435
|
4.8
|
44.6
|
1.0
|
|
C
|
B:GLY478
|
4.8
|
45.9
|
1.0
|
|
O
|
A:ALA433
|
4.9
|
43.9
|
1.0
|
|
CB
|
A:GLU347
|
5.0
|
45.2
|
1.0
|
|
Calcium binding site 3 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 3 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca701
b:30.6
occ:1.00
|
OD1
|
B:ASP123
|
2.0
|
36.9
|
1.0
|
|
OD1
|
B:ASP124
|
2.2
|
36.8
|
1.0
|
|
OD1
|
B:ASP76
|
2.6
|
35.7
|
1.0
|
|
O
|
B:ASP123
|
2.7
|
36.9
|
1.0
|
|
O
|
B:PRO77
|
3.0
|
32.8
|
1.0
|
|
O
|
B:TYR129
|
3.1
|
34.3
|
1.0
|
|
CG
|
B:ASP123
|
3.2
|
36.9
|
1.0
|
|
CG
|
B:ASP124
|
3.3
|
36.8
|
1.0
|
|
C
|
B:ASP123
|
3.3
|
36.9
|
1.0
|
|
CG
|
B:ASP76
|
3.5
|
35.7
|
1.0
|
|
OD2
|
B:ASP124
|
3.9
|
36.8
|
1.0
|
|
CA
|
B:ASP123
|
3.9
|
36.9
|
1.0
|
|
CG2
|
B:THR150
|
4.0
|
36.9
|
1.0
|
|
CB
|
B:ASP123
|
4.0
|
36.9
|
1.0
|
|
OD2
|
B:ASP123
|
4.1
|
36.9
|
1.0
|
|
N
|
B:ASP124
|
4.1
|
36.8
|
1.0
|
|
C
|
B:TYR129
|
4.1
|
34.3
|
1.0
|
|
OD2
|
B:ASP76
|
4.1
|
35.7
|
1.0
|
|
C
|
B:PRO77
|
4.1
|
32.8
|
1.0
|
|
CA
|
B:ASP124
|
4.3
|
36.8
|
1.0
|
|
CB
|
B:TYR129
|
4.3
|
34.3
|
1.0
|
|
N
|
B:PRO77
|
4.4
|
32.8
|
1.0
|
|
CB
|
B:ASP124
|
4.4
|
36.8
|
1.0
|
|
C
|
B:ASP76
|
4.4
|
35.7
|
1.0
|
|
NZ
|
A:LYS255
|
4.4
|
39.3
|
1.0
|
|
CA
|
B:TYR129
|
4.5
|
34.3
|
1.0
|
|
CB
|
B:ASP76
|
4.6
|
35.7
|
1.0
|
|
O
|
B:ASP76
|
4.6
|
35.7
|
1.0
|
|
CD
|
B:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
B:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
B:ASP76
|
4.9
|
35.7
|
1.0
|
|
CB
|
B:THR150
|
4.9
|
36.9
|
1.0
|
|
Calcium binding site 4 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 4 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca707
b:38.1
occ:1.00
|
O
|
C:HOH807
|
2.1
|
50.0
|
1.0
|
|
OE1
|
B:GLU347
|
2.1
|
45.2
|
1.0
|
|
O
|
B:PRO434
|
2.3
|
43.6
|
1.0
|
|
O
|
C:LEU477
|
2.5
|
46.6
|
1.0
|
|
O
|
B:PHE436
|
2.6
|
42.3
|
1.0
|
|
O
|
C:HOH804
|
2.6
|
50.0
|
1.0
|
|
CD
|
B:GLU347
|
2.8
|
45.2
|
1.0
|
|
OE2
|
B:GLU347
|
2.9
|
45.2
|
1.0
|
|
C
|
B:PRO434
|
3.2
|
43.6
|
1.0
|
|
N
|
B:PHE436
|
3.6
|
42.3
|
1.0
|
|
C
|
B:PHE436
|
3.6
|
42.3
|
1.0
|
|
C
|
C:LEU477
|
3.7
|
46.6
|
1.0
|
|
CA
|
B:PRO434
|
3.9
|
43.6
|
1.0
|
|
CA
|
B:PHE436
|
4.0
|
42.3
|
1.0
|
|
C
|
B:ASP435
|
4.0
|
44.6
|
1.0
|
|
N
|
B:ASP435
|
4.2
|
44.6
|
1.0
|
|
CB
|
B:PHE436
|
4.2
|
42.3
|
1.0
|
|
CG
|
B:GLU347
|
4.2
|
45.2
|
1.0
|
|
OE2
|
C:GLU480
|
4.4
|
48.7
|
1.0
|
|
CA
|
B:ASP435
|
4.4
|
44.6
|
1.0
|
|
CA
|
C:GLY478
|
4.4
|
45.9
|
1.0
|
|
N
|
C:GLY478
|
4.5
|
45.9
|
1.0
|
|
O
|
B:ASP435
|
4.6
|
44.6
|
1.0
|
|
O
|
B:ALA433
|
4.6
|
43.9
|
1.0
|
|
O
|
C:GLU479
|
4.7
|
47.6
|
1.0
|
|
N
|
C:LEU477
|
4.7
|
46.6
|
1.0
|
|
CB
|
C:GLN476
|
4.7
|
50.2
|
1.0
|
|
CA
|
C:LEU477
|
4.7
|
46.6
|
1.0
|
|
O
|
B:HOH806
|
4.7
|
50.0
|
1.0
|
|
C
|
C:GLY478
|
4.8
|
45.9
|
1.0
|
|
N
|
B:ASP437
|
4.8
|
43.0
|
1.0
|
|
CB
|
B:PRO434
|
4.8
|
43.6
|
1.0
|
|
CB
|
B:GLU347
|
4.8
|
45.2
|
1.0
|
|
Calcium binding site 5 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 5 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca701
b:30.6
occ:1.00
|
OD1
|
C:ASP123
|
2.0
|
36.9
|
1.0
|
|
OD1
|
C:ASP124
|
2.2
|
36.8
|
1.0
|
|
OD1
|
C:ASP76
|
2.6
|
35.7
|
1.0
|
|
O
|
C:ASP123
|
2.7
|
36.9
|
1.0
|
|
O
|
C:PRO77
|
3.0
|
32.8
|
1.0
|
|
O
|
C:TYR129
|
3.1
|
34.3
|
1.0
|
|
CG
|
C:ASP123
|
3.2
|
36.9
|
1.0
|
|
CG
|
C:ASP124
|
3.3
|
36.8
|
1.0
|
|
C
|
C:ASP123
|
3.3
|
36.9
|
1.0
|
|
CG
|
C:ASP76
|
3.5
|
35.7
|
1.0
|
|
OD2
|
C:ASP124
|
3.9
|
36.8
|
1.0
|
|
CA
|
C:ASP123
|
3.9
|
36.9
|
1.0
|
|
CG2
|
C:THR150
|
4.0
|
36.9
|
1.0
|
|
CB
|
C:ASP123
|
4.0
|
36.9
|
1.0
|
|
OD2
|
C:ASP123
|
4.1
|
36.9
|
1.0
|
|
N
|
C:ASP124
|
4.1
|
36.8
|
1.0
|
|
C
|
C:TYR129
|
4.1
|
34.3
|
1.0
|
|
OD2
|
C:ASP76
|
4.1
|
35.7
|
1.0
|
|
C
|
C:PRO77
|
4.1
|
32.8
|
1.0
|
|
CA
|
C:ASP124
|
4.3
|
36.8
|
1.0
|
|
CB
|
C:TYR129
|
4.3
|
34.3
|
1.0
|
|
N
|
C:PRO77
|
4.4
|
32.8
|
1.0
|
|
CB
|
C:ASP124
|
4.4
|
36.8
|
1.0
|
|
C
|
C:ASP76
|
4.4
|
35.7
|
1.0
|
|
CA
|
C:TYR129
|
4.5
|
34.3
|
1.0
|
|
CB
|
C:ASP76
|
4.6
|
35.7
|
1.0
|
|
O
|
C:ASP76
|
4.6
|
35.7
|
1.0
|
|
CD
|
C:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
C:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
C:ASP76
|
4.9
|
35.7
|
1.0
|
|
CB
|
C:THR150
|
4.9
|
36.9
|
1.0
|
|
Calcium binding site 6 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 6 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca708
b:38.1
occ:1.00
|
O
|
D:HOH807
|
2.1
|
50.0
|
1.0
|
|
OE1
|
C:GLU347
|
2.1
|
45.2
|
1.0
|
|
O
|
C:PRO434
|
2.3
|
43.6
|
1.0
|
|
O
|
D:LEU477
|
2.5
|
46.6
|
1.0
|
|
O
|
C:PHE436
|
2.6
|
42.3
|
1.0
|
|
O
|
D:HOH804
|
2.6
|
50.0
|
1.0
|
|
CD
|
C:GLU347
|
2.8
|
45.2
|
1.0
|
|
OE2
|
C:GLU347
|
2.9
|
45.2
|
1.0
|
|
C
|
C:PRO434
|
3.2
|
43.6
|
1.0
|
|
N
|
C:PHE436
|
3.6
|
42.3
|
1.0
|
|
C
|
C:PHE436
|
3.6
|
42.3
|
1.0
|
|
C
|
D:LEU477
|
3.7
|
46.6
|
1.0
|
|
CA
|
C:PRO434
|
3.9
|
43.6
|
1.0
|
|
CA
|
C:PHE436
|
4.0
|
42.3
|
1.0
|
|
C
|
C:ASP435
|
4.0
|
44.6
|
1.0
|
|
N
|
C:ASP435
|
4.2
|
44.6
|
1.0
|
|
CB
|
C:PHE436
|
4.2
|
42.3
|
1.0
|
|
CG
|
C:GLU347
|
4.2
|
45.2
|
1.0
|
|
OE2
|
D:GLU480
|
4.4
|
48.7
|
1.0
|
|
CA
|
C:ASP435
|
4.4
|
44.6
|
1.0
|
|
CA
|
D:GLY478
|
4.4
|
45.9
|
1.0
|
|
N
|
D:GLY478
|
4.5
|
45.9
|
1.0
|
|
O
|
C:ASP435
|
4.6
|
44.6
|
1.0
|
|
O
|
C:ALA433
|
4.7
|
43.9
|
1.0
|
|
O
|
D:GLU479
|
4.7
|
47.6
|
1.0
|
|
N
|
D:LEU477
|
4.7
|
46.6
|
1.0
|
|
CB
|
D:GLN476
|
4.7
|
50.2
|
1.0
|
|
CA
|
D:LEU477
|
4.7
|
46.6
|
1.0
|
|
O
|
C:HOH805
|
4.7
|
50.0
|
1.0
|
|
C
|
D:GLY478
|
4.8
|
45.9
|
1.0
|
|
N
|
C:ASP437
|
4.8
|
43.0
|
1.0
|
|
CB
|
C:PRO434
|
4.8
|
43.6
|
1.0
|
|
CB
|
C:GLU347
|
4.9
|
45.2
|
1.0
|
|
Calcium binding site 7 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 7 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca701
b:30.6
occ:1.00
|
OD1
|
D:ASP123
|
2.0
|
36.9
|
1.0
|
|
OD1
|
D:ASP124
|
2.2
|
36.8
|
1.0
|
|
OD1
|
D:ASP76
|
2.6
|
35.7
|
1.0
|
|
O
|
D:ASP123
|
2.7
|
36.9
|
1.0
|
|
O
|
D:PRO77
|
3.0
|
32.8
|
1.0
|
|
O
|
D:TYR129
|
3.1
|
34.3
|
1.0
|
|
CG
|
D:ASP123
|
3.2
|
36.9
|
1.0
|
|
CG
|
D:ASP124
|
3.3
|
36.8
|
1.0
|
|
C
|
D:ASP123
|
3.3
|
36.9
|
1.0
|
|
CG
|
D:ASP76
|
3.5
|
35.7
|
1.0
|
|
OD2
|
D:ASP124
|
3.9
|
36.8
|
1.0
|
|
CA
|
D:ASP123
|
3.9
|
36.9
|
1.0
|
|
CG2
|
D:THR150
|
4.0
|
36.9
|
1.0
|
|
CB
|
D:ASP123
|
4.0
|
36.9
|
1.0
|
|
OD2
|
D:ASP123
|
4.1
|
36.9
|
1.0
|
|
N
|
D:ASP124
|
4.1
|
36.8
|
1.0
|
|
C
|
D:TYR129
|
4.1
|
34.3
|
1.0
|
|
OD2
|
D:ASP76
|
4.1
|
35.7
|
1.0
|
|
C
|
D:PRO77
|
4.1
|
32.8
|
1.0
|
|
CA
|
D:ASP124
|
4.3
|
36.8
|
1.0
|
|
CB
|
D:TYR129
|
4.3
|
34.3
|
1.0
|
|
N
|
D:PRO77
|
4.4
|
32.8
|
1.0
|
|
CB
|
D:ASP124
|
4.4
|
36.8
|
1.0
|
|
C
|
D:ASP76
|
4.4
|
35.7
|
1.0
|
|
CA
|
D:TYR129
|
4.5
|
34.3
|
1.0
|
|
CB
|
D:ASP76
|
4.6
|
35.7
|
1.0
|
|
O
|
D:ASP76
|
4.6
|
35.7
|
1.0
|
|
CD
|
D:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
D:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
D:ASP76
|
4.9
|
35.7
|
1.0
|
|
CB
|
D:THR150
|
4.9
|
36.9
|
1.0
|
|
Calcium binding site 8 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 8 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca708
b:38.1
occ:1.00
|
O
|
E:HOH807
|
2.1
|
50.0
|
1.0
|
|
OE1
|
D:GLU347
|
2.1
|
45.2
|
1.0
|
|
O
|
D:PRO434
|
2.3
|
43.6
|
1.0
|
|
O
|
E:LEU477
|
2.5
|
46.6
|
1.0
|
|
O
|
D:PHE436
|
2.6
|
42.3
|
1.0
|
|
O
|
E:HOH805
|
2.6
|
50.0
|
1.0
|
|
CD
|
D:GLU347
|
2.8
|
45.2
|
1.0
|
|
OE2
|
D:GLU347
|
2.9
|
45.2
|
1.0
|
|
C
|
D:PRO434
|
3.2
|
43.6
|
1.0
|
|
N
|
D:PHE436
|
3.6
|
42.3
|
1.0
|
|
C
|
D:PHE436
|
3.6
|
42.3
|
1.0
|
|
C
|
E:LEU477
|
3.7
|
46.6
|
1.0
|
|
CA
|
D:PRO434
|
3.9
|
43.6
|
1.0
|
|
CA
|
D:PHE436
|
4.0
|
42.3
|
1.0
|
|
C
|
D:ASP435
|
4.0
|
44.6
|
1.0
|
|
N
|
D:ASP435
|
4.2
|
44.6
|
1.0
|
|
CB
|
D:PHE436
|
4.2
|
42.3
|
1.0
|
|
CG
|
D:GLU347
|
4.2
|
45.2
|
1.0
|
|
CA
|
D:ASP435
|
4.4
|
44.6
|
1.0
|
|
OE2
|
E:GLU480
|
4.4
|
48.7
|
1.0
|
|
CA
|
E:GLY478
|
4.4
|
45.9
|
1.0
|
|
N
|
E:GLY478
|
4.5
|
45.9
|
1.0
|
|
O
|
D:ASP435
|
4.6
|
44.6
|
1.0
|
|
O
|
D:ALA433
|
4.7
|
43.9
|
1.0
|
|
O
|
E:GLU479
|
4.7
|
47.6
|
1.0
|
|
N
|
E:LEU477
|
4.7
|
46.6
|
1.0
|
|
CB
|
E:GLN476
|
4.7
|
50.2
|
1.0
|
|
CA
|
E:LEU477
|
4.7
|
46.6
|
1.0
|
|
O
|
D:HOH805
|
4.7
|
50.0
|
1.0
|
|
C
|
E:GLY478
|
4.8
|
45.9
|
1.0
|
|
N
|
D:ASP437
|
4.8
|
43.0
|
1.0
|
|
CB
|
D:PRO434
|
4.8
|
43.6
|
1.0
|
|
CB
|
D:GLU347
|
4.9
|
45.2
|
1.0
|
|
Calcium binding site 9 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 9 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca701
b:38.1
occ:1.00
|
O
|
A:HOH807
|
2.1
|
50.0
|
1.0
|
|
O
|
E:PRO434
|
2.2
|
43.6
|
1.0
|
|
OE1
|
E:GLU347
|
2.5
|
45.2
|
1.0
|
|
O
|
A:LEU477
|
2.5
|
46.6
|
1.0
|
|
O
|
A:HOH805
|
2.6
|
50.0
|
1.0
|
|
O
|
E:PHE436
|
2.6
|
42.3
|
1.0
|
|
OE2
|
E:GLU347
|
3.1
|
45.2
|
1.0
|
|
CD
|
E:GLU347
|
3.2
|
45.2
|
1.0
|
|
C
|
E:PRO434
|
3.3
|
43.6
|
1.0
|
|
C
|
E:PHE436
|
3.7
|
42.3
|
1.0
|
|
N
|
E:PHE436
|
3.7
|
42.3
|
1.0
|
|
C
|
A:LEU477
|
3.7
|
46.6
|
1.0
|
|
C
|
E:ASP435
|
4.0
|
44.6
|
1.0
|
|
CA
|
E:PRO434
|
4.0
|
43.6
|
1.0
|
|
CA
|
E:PHE436
|
4.1
|
42.3
|
1.0
|
|
N
|
E:ASP435
|
4.2
|
44.6
|
1.0
|
|
CA
|
E:ASP435
|
4.3
|
44.6
|
1.0
|
|
OE2
|
A:GLU480
|
4.4
|
48.7
|
1.0
|
|
CA
|
A:GLY478
|
4.4
|
45.9
|
1.0
|
|
CB
|
E:PHE436
|
4.5
|
42.3
|
1.0
|
|
N
|
A:GLY478
|
4.5
|
45.9
|
1.0
|
|
O
|
E:ASP435
|
4.6
|
44.6
|
1.0
|
|
CG
|
E:GLU347
|
4.6
|
45.2
|
1.0
|
|
O
|
A:GLU479
|
4.7
|
47.6
|
1.0
|
|
N
|
A:LEU477
|
4.7
|
46.6
|
1.0
|
|
CB
|
A:GLN476
|
4.7
|
50.2
|
1.0
|
|
CA
|
A:LEU477
|
4.7
|
46.6
|
1.0
|
|
O
|
E:HOH813
|
4.7
|
50.0
|
1.0
|
|
C
|
A:GLY478
|
4.8
|
45.9
|
1.0
|
|
CB
|
E:PRO434
|
4.8
|
43.6
|
1.0
|
|
N
|
E:ASP437
|
4.9
|
43.0
|
1.0
|
|
O
|
E:ALA433
|
4.9
|
43.9
|
1.0
|
|
Calcium binding site 10 out
of 10 in 9ev8
Go back to
Calcium Binding Sites List in 9ev8
Calcium binding site 10 out
of 10 in the Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Non-Uniform Refinement of the Cryoem Structure of Declic Nanodisc with 10MM Calcium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca704
b:30.6
occ:1.00
|
OD1
|
E:ASP123
|
2.0
|
36.9
|
1.0
|
|
OD1
|
E:ASP124
|
2.2
|
36.8
|
1.0
|
|
OD1
|
E:ASP76
|
2.6
|
35.7
|
1.0
|
|
O
|
E:ASP123
|
2.7
|
36.9
|
1.0
|
|
O
|
E:PRO77
|
3.0
|
32.8
|
1.0
|
|
O
|
E:TYR129
|
3.1
|
34.3
|
1.0
|
|
CG
|
E:ASP123
|
3.2
|
36.9
|
1.0
|
|
CG
|
E:ASP124
|
3.3
|
36.8
|
1.0
|
|
C
|
E:ASP123
|
3.3
|
36.9
|
1.0
|
|
CG
|
E:ASP76
|
3.5
|
35.7
|
1.0
|
|
OD2
|
E:ASP124
|
3.9
|
36.8
|
1.0
|
|
CA
|
E:ASP123
|
3.9
|
36.9
|
1.0
|
|
CG2
|
E:THR150
|
4.0
|
36.9
|
1.0
|
|
CB
|
E:ASP123
|
4.0
|
36.9
|
1.0
|
|
OD2
|
E:ASP123
|
4.1
|
36.9
|
1.0
|
|
N
|
E:ASP124
|
4.1
|
36.8
|
1.0
|
|
C
|
E:TYR129
|
4.1
|
34.3
|
1.0
|
|
OD2
|
E:ASP76
|
4.1
|
35.7
|
1.0
|
|
C
|
E:PRO77
|
4.1
|
32.8
|
1.0
|
|
CA
|
E:ASP124
|
4.3
|
36.8
|
1.0
|
|
CB
|
E:TYR129
|
4.3
|
34.3
|
1.0
|
|
N
|
E:PRO77
|
4.4
|
32.8
|
1.0
|
|
CB
|
E:ASP124
|
4.4
|
36.8
|
1.0
|
|
C
|
E:ASP76
|
4.4
|
35.7
|
1.0
|
|
CA
|
E:TYR129
|
4.5
|
34.3
|
1.0
|
|
CB
|
E:ASP76
|
4.6
|
35.7
|
1.0
|
|
O
|
E:ASP76
|
4.6
|
35.7
|
1.0
|
|
CD
|
E:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
E:PRO77
|
4.8
|
32.8
|
1.0
|
|
CA
|
E:ASP76
|
4.9
|
35.7
|
1.0
|
|
CB
|
E:THR150
|
4.9
|
36.9
|
1.0
|
|
Reference:
C.Fan,
R.J.Howard,
E.Lindahl.
Calcium Stabilization of A Flexible N-Terminal Domain in A Pentameric Ligand-Gated Ion Channel To Be Published.
Page generated: Thu Jul 10 09:34:55 2025
|
