Calcium in PDB 9eys: Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203
Enzymatic activity of Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203
All present enzymatic activity of Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203:
1.97.1.12;
Other elements in 9eys:
The structure of Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203 also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203
(pdb code 9eys). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the
Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203, PDB code: 9eys:
Jump to Calcium binding site number:
1;
2;
3;
Calcium binding site 1 out
of 3 in 9eys
Go back to
Calcium Binding Sites List in 9eys
Calcium binding site 1 out
of 3 in the Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Ca210
b:58.3
occ:1.00
|
OXT
|
j:ASN183
|
2.3
|
68.2
|
1.0
|
O
|
j:VAL180
|
2.3
|
59.8
|
1.0
|
O
|
A:HOH920
|
2.3
|
58.7
|
1.0
|
O
|
L:PRO84
|
2.3
|
56.4
|
1.0
|
O
|
j:HOH306
|
2.3
|
53.2
|
1.0
|
OE1
|
L:GLU87
|
2.7
|
65.3
|
1.0
|
OE2
|
L:GLU87
|
2.9
|
67.4
|
1.0
|
CD
|
L:GLU87
|
3.1
|
68.2
|
1.0
|
C
|
j:ASN183
|
3.4
|
72.3
|
1.0
|
C
|
L:PRO84
|
3.4
|
51.2
|
1.0
|
C
|
j:VAL180
|
3.5
|
54.0
|
1.0
|
O
|
j:ASN183
|
3.9
|
74.8
|
1.0
|
CA
|
j:ASN181
|
4.0
|
55.5
|
1.0
|
CA
|
L:PRO84
|
4.1
|
51.1
|
1.0
|
N
|
j:ASN181
|
4.2
|
54.5
|
1.0
|
N
|
j:ASN183
|
4.4
|
71.0
|
1.0
|
NE2
|
A:GLN475
|
4.4
|
56.2
|
1.0
|
N
|
L:LEU85
|
4.5
|
54.1
|
1.0
|
CA
|
j:ASN183
|
4.5
|
72.7
|
1.0
|
C
|
j:ASN181
|
4.5
|
58.0
|
1.0
|
CB
|
L:PRO84
|
4.6
|
48.8
|
1.0
|
CG
|
L:GLU87
|
4.6
|
65.5
|
1.0
|
CA
|
j:VAL180
|
4.6
|
55.5
|
1.0
|
OD1
|
j:ASN181
|
4.6
|
55.8
|
1.0
|
OD1
|
A:ASP476
|
4.6
|
54.8
|
1.0
|
CA
|
L:LEU85
|
4.7
|
51.7
|
1.0
|
OD2
|
A:ASP476
|
4.7
|
56.0
|
1.0
|
CB
|
j:VAL180
|
4.8
|
56.4
|
1.0
|
N
|
j:VAL182
|
4.9
|
61.1
|
1.0
|
|
Calcium binding site 2 out
of 3 in 9eys
Go back to
Calcium Binding Sites List in 9eys
Calcium binding site 2 out
of 3 in the Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
W:Ca1509
b:58.7
occ:1.00
|
O
|
W:PRO84
|
2.3
|
57.8
|
1.0
|
O
|
L:VAL180
|
2.3
|
59.5
|
1.0
|
OXT
|
L:ASN183
|
2.3
|
69.0
|
1.0
|
O
|
N:HOH918
|
2.3
|
58.4
|
1.0
|
O
|
N:HOH926
|
2.4
|
54.6
|
1.0
|
OE1
|
W:GLU87
|
2.6
|
65.2
|
1.0
|
OE2
|
W:GLU87
|
2.7
|
65.8
|
1.0
|
CD
|
W:GLU87
|
3.0
|
68.3
|
1.0
|
C
|
L:ASN183
|
3.4
|
73.6
|
1.0
|
C
|
W:PRO84
|
3.5
|
52.6
|
1.0
|
C
|
L:VAL180
|
3.5
|
53.8
|
1.0
|
O
|
L:ASN183
|
3.9
|
77.3
|
1.0
|
CA
|
L:ASN181
|
4.0
|
54.8
|
1.0
|
CA
|
W:PRO84
|
4.2
|
50.9
|
1.0
|
N
|
L:ASN181
|
4.2
|
54.7
|
1.0
|
N
|
L:ASN183
|
4.4
|
68.9
|
1.0
|
NE2
|
N:GLN475
|
4.4
|
56.7
|
1.0
|
CG
|
W:GLU87
|
4.4
|
65.0
|
1.0
|
N
|
W:LEU85
|
4.5
|
54.4
|
1.0
|
CA
|
L:ASN183
|
4.5
|
72.0
|
1.0
|
C
|
L:ASN181
|
4.5
|
58.3
|
1.0
|
CA
|
L:VAL180
|
4.6
|
53.2
|
1.0
|
CA
|
W:LEU85
|
4.6
|
52.8
|
1.0
|
CB
|
W:PRO84
|
4.7
|
48.1
|
1.0
|
OD1
|
L:ASN181
|
4.7
|
54.4
|
1.0
|
OD1
|
N:ASP476
|
4.7
|
55.9
|
1.0
|
OD2
|
N:ASP476
|
4.7
|
54.6
|
1.0
|
CB
|
L:VAL180
|
4.8
|
55.5
|
1.0
|
N
|
L:VAL182
|
4.9
|
60.6
|
1.0
|
|
Calcium binding site 3 out
of 3 in 9eys
Go back to
Calcium Binding Sites List in 9eys
Calcium binding site 3 out
of 3 in the Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
j:Ca209
b:57.8
occ:1.00
|
O
|
j:PRO84
|
2.2
|
57.3
|
1.0
|
OXT
|
W:ASN183
|
2.3
|
66.6
|
1.0
|
O
|
W:VAL180
|
2.3
|
60.9
|
1.0
|
O
|
a:HOH926
|
2.3
|
57.1
|
1.0
|
O
|
a:HOH934
|
2.4
|
53.7
|
1.0
|
OE1
|
j:GLU87
|
2.5
|
65.3
|
1.0
|
OE2
|
j:GLU87
|
2.7
|
65.1
|
1.0
|
CD
|
j:GLU87
|
2.9
|
66.5
|
1.0
|
C
|
W:ASN183
|
3.4
|
71.2
|
1.0
|
C
|
j:PRO84
|
3.4
|
52.4
|
1.0
|
C
|
W:VAL180
|
3.5
|
54.6
|
1.0
|
O
|
W:ASN183
|
3.9
|
74.2
|
1.0
|
CA
|
W:ASN181
|
4.1
|
52.5
|
1.0
|
CA
|
j:PRO84
|
4.2
|
51.4
|
1.0
|
N
|
W:ASN181
|
4.3
|
54.2
|
1.0
|
CG
|
j:GLU87
|
4.4
|
65.2
|
1.0
|
N
|
j:LEU85
|
4.4
|
53.7
|
1.0
|
NE2
|
a:GLN475
|
4.4
|
54.4
|
1.0
|
N
|
W:ASN183
|
4.5
|
68.6
|
1.0
|
CA
|
W:ASN183
|
4.5
|
71.7
|
1.0
|
CA
|
j:LEU85
|
4.5
|
51.6
|
1.0
|
CA
|
W:VAL180
|
4.6
|
54.7
|
1.0
|
C
|
W:ASN181
|
4.6
|
56.0
|
1.0
|
CB
|
j:PRO84
|
4.7
|
48.8
|
1.0
|
OD1
|
W:ASN181
|
4.7
|
53.1
|
1.0
|
OD1
|
a:ASP476
|
4.8
|
56.0
|
1.0
|
CB
|
W:VAL180
|
4.8
|
55.0
|
1.0
|
OD2
|
a:ASP476
|
4.8
|
54.3
|
1.0
|
N
|
W:VAL182
|
5.0
|
58.6
|
1.0
|
|
Reference:
G.Consoli,
F.Tufail,
H.Leong,
A.Fantuzzi,
A.W.Rutherford.
Structure of Far-Red Photosystem I From C. Thermalis Pcc 7203 To Be Published.
Page generated: Thu Jul 10 09:36:36 2025
|