Calcium in PDB 9h7g: Human Transthyretin in Complex with 1H-Indole-3-Carbonitrile

The structure of Human Transthyretin in Complex with 1H-Indole-3-Carbonitrile, PDB code: 9h7g was solved by W.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	51.15 / 1.49
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	85.12, 42.18, 64, 90, 90, 90
R / Rfree (%)	16 / 21

The binding sites of Calcium atom in the Human Transthyretin in Complex with 1H-Indole-3-Carbonitrile (pdb code 9h7g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Human Transthyretin in Complex with 1H-Indole-3-Carbonitrile, PDB code: 9h7g:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Human Transthyretin in Complex with 1H-Indole-3-Carbonitrile


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Transthyretin in Complex with 1H-Indole-3-Carbonitrile within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:34.2 occ:1.00 O A:HOH327 2.1 40.6 1.0 O A:HOH329 2.3 37.7 1.0 OE2 A:GLU66 2.4 23.4 1.0 O A:ASP99 2.5 22.8 1.0 OD1 A:ASP99 2.9 44.0 1.0 CD A:GLU66 3.2 25.9 1.0 C A:ASP99 3.5 20.3 1.0 OE1 A:GLU66 3.5 20.7 1.0 CG A:ASP99 3.7 29.3 1.0 CA A:ASP99 3.8 18.0 1.0 CB A:ASP99 4.4 20.6 1.0 OD2 A:ASP99 4.5 38.6 1.0 CG A:GLU66 4.6 22.2 1.0 N A:SER100 4.7 19.8 1.0 O A:ASN98 4.9 20.3 1.0

Calcium binding site 2 out of 2 in the Human Transthyretin in Complex with 1H-Indole-3-Carbonitrile


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human Transthyretin in Complex with 1H-Indole-3-Carbonitrile within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca201 b:30.5 occ:0.80 O B:HOH303 2.3 36.0 1.0 O B:PHE44 3.0 29.5 1.0 C B:PHE44 4.0 29.9 1.0 OE2 B:GLU63 4.4 31.6 0.5 CA B:ALA45 4.4 20.4 1.0 N B:ALA45 4.5 27.3 1.0 OE1 B:GLU63 4.5 25.5 0.5 CD B:GLU63 4.9 28.9 0.5 CB B:ALA45 4.9 22.2 1.0

W.Chen, W.Chen. N/A N/A.
ISSN: ISSN 2692-8205
DOI: 10.1101/2025.02.22.639275