Calcium in PDB 9l9a: Structure of Western Equine Encephalitis Virus Mcmillan Strain in Complex with Vldlr LA2-3

The binding sites of Calcium atom in the Structure of Western Equine Encephalitis Virus Mcmillan Strain in Complex with Vldlr LA2-3 (pdb code 9l9a). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Western Equine Encephalitis Virus Mcmillan Strain in Complex with Vldlr LA2-3, PDB code: 9l9a:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Western Equine Encephalitis Virus Mcmillan Strain in Complex with Vldlr LA2-3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Western Equine Encephalitis Virus Mcmillan Strain in Complex with Vldlr LA2-3 within 5.0Å range: probe atom residue distance (Å) B Occ M:Ca201 b:72.8 occ:1.00 OD1 M:ASP92 2.3 82.0 1.0 OD2 M:ASP102 2.3 85.8 1.0 O M:TRP89 2.3 84.4 1.0 OD2 M:ASP96 2.4 84.3 1.0 O M:ASP94 2.4 72.5 1.0 OE2 M:GLU103 2.4 83.8 1.0 CG M:ASP92 3.2 82.0 1.0 CD M:GLU103 3.2 83.8 1.0 CG M:ASP96 3.4 84.3 1.0 OD2 M:ASP92 3.4 82.0 1.0 CG M:ASP102 3.4 85.8 1.0 CG M:GLU103 3.5 83.8 1.0 C M:TRP89 3.5 84.4 1.0 C M:ASP94 3.6 72.5 1.0 N M:ASP96 4.0 84.3 1.0 CB M:ASP96 4.0 84.3 1.0 CB M:ASP102 4.0 85.8 1.0 N M:ASP94 4.2 72.5 1.0 CA M:LYS90 4.3 92.3 1.0 OE1 M:GLU103 4.3 83.8 1.0 OD1 M:ASP96 4.4 84.3 1.0 N M:ASP92 4.4 82.0 1.0 N M:LYS90 4.4 92.3 1.0 CA M:ASP94 4.4 72.5 1.0 N M:CYS91 4.4 93.8 1.0 O M:ASP102 4.5 85.8 1.0 CA M:TRP89 4.5 84.4 1.0 OD1 M:ASP102 4.5 85.8 1.0 CB M:TRP89 4.5 84.4 1.0 CB M:ASP92 4.5 82.0 1.0 N M:PRO95 4.6 77.5 1.0 C M:ASP102 4.6 85.8 1.0 C M:LYS90 4.6 92.3 1.0 CB M:ASP94 4.6 72.5 1.0 CA M:ASP96 4.7 84.3 1.0 CA M:PRO95 4.7 77.5 1.0 C M:PRO95 4.7 77.5 1.0 CB M:GLU103 4.9 83.8 1.0 CA M:ASP92 4.9 82.0 1.0 N M:GLU103 5.0 83.8 1.0 CA M:ASP102 5.0 85.8 1.0

Calcium binding site 2 out of 2 in the Structure of Western Equine Encephalitis Virus Mcmillan Strain in Complex with Vldlr LA2-3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Western Equine Encephalitis Virus Mcmillan Strain in Complex with Vldlr LA2-3 within 5.0Å range: probe atom residue distance (Å) B Occ M:Ca202 b:86.7 occ:1.00 OD1 M:ASP135 2.3 91.6 1.0 OD2 M:ASP145 2.3 101.3 1.0 OE2 M:GLU146 2.4 102.4 1.0 O M:GLU137 2.4 89.8 1.0 OD2 M:ASP139 2.5 94.2 1.0 CG M:ASP145 2.9 101.3 1.0 CG M:ASP135 3.1 91.6 1.0 OD1 M:ASP145 3.1 101.3 1.0 OD2 M:ASP135 3.2 91.6 1.0 CD M:GLU146 3.5 102.4 1.0 C M:GLU137 3.6 89.8 1.0 CG M:ASP139 3.7 94.2 1.0 O M:TRP132 3.7 92.2 1.0 OE1 M:GLU146 3.9 102.4 1.0 O M:ASP145 4.0 101.3 1.0 CB M:ASP145 4.0 101.3 1.0 C M:TRP132 4.0 92.2 1.0 N M:ASP135 4.2 91.6 1.0 N M:ASP139 4.3 94.2 1.0 CB M:ASP139 4.3 94.2 1.0 N M:CYS134 4.3 105.7 1.0 N M:ARG133 4.4 102.9 1.0 CA M:ARG133 4.4 102.9 1.0 CA M:ASN138 4.4 93.4 1.0 N M:GLU137 4.4 89.8 1.0 CB M:ASP135 4.5 91.6 1.0 C M:ASN138 4.5 93.4 1.0 N M:ASN138 4.5 93.4 1.0 C M:ARG133 4.5 102.9 1.0 C M:ASP145 4.6 101.3 1.0 CG M:GLU137 4.6 89.8 1.0 CA M:GLU137 4.6 89.8 1.0 CG M:GLU146 4.7 102.4 1.0 OD1 M:ASP139 4.7 94.2 1.0 CA M:TRP132 4.8 92.2 1.0 CB M:TRP132 4.8 92.2 1.0 CA M:ASP135 4.8 91.6 1.0 CA M:ASP145 4.9 101.3 1.0 CA M:ASP139 5.0 94.2 1.0 N M:GLY136 5.0 83.2 1.0

B.Ma, Z.Cao, W.Ding, X.Zhang, Y.Xiang, D.Cao. Structural Basis For the Recognition of Two Different Types of Receptors By Western Equine Encephalitis Virus. Cell Rep V. 44 15724 2025.
ISSN: ESSN 2211-1247
PubMed: 40402741
DOI: 10.1016/J.CELREP.2025.115724