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Calcium in PDB 9lrr: Cryo-Em Structure of Na+-Translocating Nadh-Ubiquinone Oxidoreductase Nqrb-G141A Mutant From Vibrio Cholerae with Bound Korormicin A

Enzymatic activity of Cryo-Em Structure of Na+-Translocating Nadh-Ubiquinone Oxidoreductase Nqrb-G141A Mutant From Vibrio Cholerae with Bound Korormicin A

All present enzymatic activity of Cryo-Em Structure of Na+-Translocating Nadh-Ubiquinone Oxidoreductase Nqrb-G141A Mutant From Vibrio Cholerae with Bound Korormicin A:
7.2.1.1;

Other elements in 9lrr:

The structure of Cryo-Em Structure of Na+-Translocating Nadh-Ubiquinone Oxidoreductase Nqrb-G141A Mutant From Vibrio Cholerae with Bound Korormicin A also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of Na+-Translocating Nadh-Ubiquinone Oxidoreductase Nqrb-G141A Mutant From Vibrio Cholerae with Bound Korormicin A (pdb code 9lrr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of Na+-Translocating Nadh-Ubiquinone Oxidoreductase Nqrb-G141A Mutant From Vibrio Cholerae with Bound Korormicin A, PDB code: 9lrr:

Calcium binding site 1 out of 1 in 9lrr

Go back to Calcium Binding Sites List in 9lrr
Calcium binding site 1 out of 1 in the Cryo-Em Structure of Na+-Translocating Nadh-Ubiquinone Oxidoreductase Nqrb-G141A Mutant From Vibrio Cholerae with Bound Korormicin A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Na+-Translocating Nadh-Ubiquinone Oxidoreductase Nqrb-G141A Mutant From Vibrio Cholerae with Bound Korormicin A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca302

b:163.9
occ:1.00
 NE2 C:GLN93 3.2 134.6 1.0
N C:ALA119 3.5 137.9 1.0
NE2 C:HIS141 3.8 114.5 1.0
CB C:ALA97 3.9 145.6 1.0
CA C:ARG118 4.0 133.9 1.0
CB C:ALA119 4.1 136.6 1.0
CD C:GLN93 4.1 131.7 1.0
CG C:GLN93 4.2 133.7 1.0
C C:ARG118 4.2 137.1 1.0
CH2 C:TRP238 4.3 115.3 1.0
CG C:ARG118 4.3 133.1 1.0
CA C:ALA119 4.4 138.1 1.0
CE1 C:HIS141 4.5 114.5 1.0
O C:ARG117 4.5 144.5 1.0
CZ2 C:TRP238 4.6 113.3 1.0
CB C:ARG118 4.7 134.3 1.0
O C:GLN93 4.8 140.1 1.0
CD2 C:HIS141 4.8 112.4 1.0
N C:ARG118 5.0 133.2 1.0

Reference:

M.Ishikawa-Fukuda, J.Kishikawa, T.Masuya, T.Ito, L.N.Butler, D.Mcfee, T.Kato, B.Barquera, H.Miyoshi, M.Murai. Structural Elucidation of the Mechanism For Inhibitor Resistance in the Na+-Translocating Nadh-Ubiquinone Oxidoreductase From Vibrio Cholerae To Be Published.
Page generated: Thu Jul 10 10:14:33 2025

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