Calcium in PDB 9mox: Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand)

The structure of Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand) also contains other interesting chemical elements:

Magnesium

(Mg)

6 atoms

The binding sites of Calcium atom in the Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand) (pdb code 9mox). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand), PDB code: 9mox:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand) within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca201 b:27.5 occ:1.00 O G:THR71 2.8 1.0 1.0 OD1 G:ASP67 2.9 1.0 1.0 N G:SER69 3.0 1.0 1.0 N G:THR71 3.1 1.0 1.0 OD2 G:ASP67 3.2 1.0 1.0 CG G:ASP67 3.2 1.0 1.0 OD2 G:ASP65 3.3 1.0 1.0 OG G:SER69 3.3 1.0 1.0 C G:THR71 3.4 1.0 1.0 N G:GLY70 3.5 1.0 1.0 N G:GLY68 3.6 1.0 1.0 CA G:THR71 3.6 1.0 1.0 O G:ILE61 3.7 1.0 1.0 C G:GLY68 3.8 1.0 1.0 CA G:GLY68 3.8 1.0 1.0 CA G:SER69 3.8 1.0 1.0 C G:SER69 3.9 1.0 1.0 CB G:THR71 3.9 1.0 1.0 OG1 G:THR71 4.0 1.0 1.0 C G:GLY70 4.0 1.0 1.0 OD1 G:ASP62 4.1 1.0 1.0 CB G:SER69 4.1 1.0 1.0 OD1 G:ASP73 4.1 1.0 1.0 CG G:ASP65 4.2 1.0 1.0 CA G:GLY70 4.3 1.0 1.0 CB G:ASP65 4.4 1.0 1.0 CB G:ASP67 4.4 1.0 1.0 N G:VAL72 4.4 1.0 1.0 C G:ASP67 4.5 1.0 1.0 O G:GLY68 4.9 1.0 1.0 O G:SER69 4.9 1.0 1.0 CA G:ASP67 5.0 1.0 1.0 C G:ILE61 5.0 1.0 1.0 CG G:ASP73 5.0 1.0 1.0

Calcium binding site 2 out of 3 in the Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand) within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca202 b:29.6 occ:1.00 O G:GLY140 1.7 1.0 1.0 CA G:ASP141 2.6 1.0 1.0 C G:GLY140 2.6 1.0 1.0 OD1 G:ASP145 2.8 1.0 1.0 OD1 G:ASP141 2.9 1.0 1.0 N G:ASP141 3.0 1.0 1.0 O G:ARG147 3.0 1.0 1.0 OD1 G:ASN143 3.0 1.0 1.0 OE2 G:GLU152 3.0 1.0 1.0 OE1 G:GLU152 3.2 1.0 1.0 C G:ASP141 3.5 1.0 1.0 CD G:GLU152 3.5 1.0 1.0 CB G:ASP141 3.5 1.0 1.0 CG G:ASP141 3.5 1.0 1.0 N G:LYS142 3.5 1.0 1.0 N G:ASP145 3.7 1.0 1.0 N G:ASN144 3.7 1.0 1.0 N G:GLY146 3.9 1.0 1.0 CG G:ASP145 4.0 1.0 1.0 CA G:GLY140 4.1 1.0 1.0 C G:ARG147 4.2 1.0 1.0 N G:ASN143 4.2 1.0 1.0 CA G:ASN144 4.2 1.0 1.0 CG G:ASN143 4.2 1.0 1.0 N G:ARG147 4.4 1.0 1.0 C G:ASN144 4.5 1.0 1.0 C G:GLY146 4.5 1.0 1.0 C G:ASN143 4.5 1.0 1.0 O G:ASP141 4.6 1.0 1.0 CA G:ASP145 4.6 1.0 1.0 CA G:GLY146 4.6 1.0 1.0 OD2 G:ASP141 4.6 1.0 1.0 C G:ASP145 4.6 1.0 1.0 CA G:LYS142 4.8 1.0 1.0 OD2 G:ASP145 4.8 1.0 1.0 CA G:ASN143 4.8 1.0 1.0 CB G:ASP145 4.9 1.0 1.0 C G:LYS142 4.9 1.0 1.0 CA G:ARG147 5.0 1.0 1.0 CG G:GLU152 5.0 1.0 1.0

Calcium binding site 3 out of 3 in the Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand) within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca203 b:29.6 occ:1.00 OD1 G:ASN107 2.2 1.0 1.0 O G:TYR111 2.3 1.0 1.0 OE2 G:GLU116 2.4 1.0 1.0 OD1 G:ASP105 2.6 1.0 1.0 OD1 G:ASP109 3.1 1.0 1.0 CD G:GLU116 3.2 1.0 1.0 CG G:ASN107 3.3 1.0 1.0 C G:TYR111 3.5 1.0 1.0 OE1 G:GLU116 3.6 1.0 1.0 CG G:ASP105 3.6 1.0 1.0 N G:ASP113 3.6 1.0 1.0 CA G:ILE112 3.8 1.0 1.0 ND2 G:ASN107 3.9 1.0 1.0 CA G:ASP105 3.9 1.0 1.0 OD2 G:ASP113 4.0 1.0 1.0 N G:ILE112 4.1 1.0 1.0 N G:LYS106 4.2 1.0 1.0 CG G:ASP109 4.2 1.0 1.0 N G:ASN107 4.2 1.0 1.0 C G:ILE112 4.2 1.0 1.0 C G:ASP105 4.2 1.0 1.0 CB G:ASP105 4.3 1.0 1.0 CD1 G:ILE112 4.4 1.0 1.0 CG G:ASP113 4.4 1.0 1.0 OD2 G:ASP105 4.5 1.0 1.0 CB G:ASN107 4.5 1.0 1.0 CG G:GLU116 4.5 1.0 1.0 CB G:ASP113 4.6 1.0 1.0 OD2 G:ASP109 4.6 1.0 1.0 CA G:TYR111 4.7 1.0 1.0 N G:TYR111 4.7 1.0 1.0 CA G:ASP113 4.7 1.0 1.0 CA G:ASN107 4.8 1.0 1.0 O G:PHE104 4.8 1.0 1.0 N G:ALA108 4.9 1.0 1.0 CB G:ILE112 5.0 1.0 1.0

C.M.Risi, V.E.Galkin. Structure of Native Murine Cardiac Thin Filament Variant I79N in Troponin T at Pca=5.8 in CA2+-Bound Partially Activated State (Lower Strand) To Be Published.