Calcium in PDB 9mx9: Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites

The structure of Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites, PDB code: 9mx9 was solved by C.Hou, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.66 / 2.55
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	119, 119, 95.316, 90, 90, 90
R / Rfree (%)	20.6 / 25

The binding sites of Calcium atom in the Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites (pdb code 9mx9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites, PDB code: 9mx9:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:90.4 occ:1.00 O A:HOH502 2.3 50.6 1.0 O D:HOH501 2.4 67.1 1.0 O A:HOH501 2.8 55.6 1.0 OD2 A:ASP315 3.0 67.2 1.0 CA D:CA401 3.7 88.8 1.0 CG A:ASP315 3.8 63.4 1.0 OD1 A:ASP315 3.9 67.7 1.0 OD2 D:ASP344 4.3 84.1 1.0 OP1 E:DG6 4.9 38.7 1.0

Calcium binding site 2 out of 5 in the Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca401 b:88.8 occ:1.00 O D:HOH501 2.8 67.1 1.0 OD2 D:ASP344 3.0 84.1 1.0 CA A:CA401 3.7 90.4 1.0 CG D:ASP344 3.9 76.9 1.0 O A:HOH502 4.0 50.6 1.0 CB D:ASP344 4.3 72.0 1.0 O5' E:DG5 4.8 44.7 1.0 OP2 E:DG5 4.8 47.1 1.0 OP1 E:DG5 4.8 50.5 1.0 CA D:ASP344 4.9 64.2 1.0 OD1 D:ASP344 5.0 79.3 1.0 C3' E:DG5 5.0 36.3 1.0

Calcium binding site 3 out of 5 in the Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca101 b:94.5 occ:1.00 O6 E:DG1 3.0 43.9 1.0 C6 E:DG1 3.9 42.1 1.0 N7 E:DG1 4.0 41.9 1.0 N4 F:DC15 4.3 43.1 1.0 C5 E:DG1 4.3 41.0 1.0 O4 F:DT14 4.9 37.3 1.0

Calcium binding site 4 out of 5 in the Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca101 b:84.7 occ:1.00 O6 F:DG12 3.0 34.3 1.0 CA F:CA102 3.5 96.5 1.0 O6 F:DG13 3.7 35.6 1.0 N7 F:DG12 3.8 38.5 1.0 C6 F:DG12 3.9 36.2 1.0 N4 E:DC3 4.1 27.9 1.0 C5 F:DC11 4.2 43.1 1.0 C5 F:DG12 4.2 37.7 1.0 C4 F:DC11 4.4 41.9 1.0 C6 F:DC11 4.5 45.1 1.0 N4 E:DC4 4.5 31.8 1.0 N4 F:DC11 4.7 40.1 1.0 C6 F:DG13 4.7 35.9 1.0 OD1 D:ASP333 4.9 53.0 1.0 N3 F:DC11 4.9 42.5 1.0

Calcium binding site 5 out of 5 in the Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of the Dna Binding Domain of FLI1 (F362A) in Complex with A Dna Containing Two Contiguous Ggaa Sites within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca102 b:96.5 occ:1.00 O6 F:DG13 3.1 35.6 1.0 CA F:CA101 3.5 84.7 1.0 N7 F:DG13 3.6 37.2 1.0 C6 F:DG13 3.9 35.9 1.0 N7 F:DG12 3.9 38.5 1.0 C5 F:DG13 4.1 37.3 1.0 C8 F:DG12 4.5 40.9 1.0 C5 F:DG12 4.6 37.7 1.0 O4 F:DT14 4.8 37.3 1.0 C8 F:DG13 4.8 39.0 1.0 O6 F:DG12 4.8 34.3 1.0 N6 E:DA2 4.9 33.8 1.0 C6 F:DG12 5.0 36.2 1.0

C.Hou, O.V.Tsodikov. Structure and Cooperative Formation of A FLI1 Filament on Contiguous Ggaa Dna Sites To Be Published.