Calcium in PDB 9mzu: Structure of Porkn From Porphyromonas Gingivalis

The binding sites of Calcium atom in the Structure of Porkn From Porphyromonas Gingivalis (pdb code 9mzu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of Porkn From Porphyromonas Gingivalis, PDB code: 9mzu:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of Porkn From Porphyromonas Gingivalis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Porkn From Porphyromonas Gingivalis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:24.2 occ:1.00 O A:HOH601 2.1 22.6 1.0 O A:ASP391 2.3 26.9 1.0 OE2 A:GLU398 2.4 24.4 1.0 OE1 A:GLU90 2.5 23.8 1.0 O A:VAL396 2.5 25.2 1.0 O A:GLY394 2.6 22.6 1.0 H1 A:HOH601 2.7 22.9 1.0 H2 A:HOH601 2.7 22.7 1.0 CD A:GLU90 3.5 25.1 1.0 C A:ASP391 3.5 21.1 1.0 C A:VAL396 3.6 18.9 1.0 CD A:GLU398 3.6 23.0 1.0 N A:VAL396 3.6 19.5 1.0 OE2 A:GLU90 3.8 24.0 1.0 C A:GLY394 3.9 21.3 1.0 CB A:ASP391 3.9 19.2 1.0 CB A:ASN395 4.0 20.2 1.0 CG A:GLU398 4.1 22.1 1.0 CG2 A:VAL396 4.2 19.4 1.0 CA A:VAL396 4.2 18.4 1.0 NH2 A:ARG468 4.3 19.7 1.0 CA A:ASP391 4.3 20.1 1.0 O A:GLY439 4.5 24.7 1.0 N A:MET392 4.5 23.1 1.0 C A:MET392 4.6 21.2 1.0 C A:ASN395 4.6 18.9 1.0 CA A:MET392 4.6 20.6 1.0 N A:GLY394 4.6 25.2 1.0 OE1 A:GLU398 4.6 25.6 1.0 N A:ALA397 4.7 19.4 1.0 CA A:ASN395 4.7 20.2 1.0 N A:ASN395 4.7 20.2 1.0 O A:MET392 4.8 27.9 1.0 CB A:VAL396 4.8 18.4 1.0 CG A:GLU90 4.8 25.7 1.0 CA A:GLY394 4.9 19.3 1.0 C A:ALA393 4.9 23.1 1.0 N A:ALA393 4.9 23.6 1.0 CA A:ALA397 5.0 17.9 1.0

Calcium binding site 2 out of 3 in the Structure of Porkn From Porphyromonas Gingivalis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Porkn From Porphyromonas Gingivalis within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca501 b:24.6 occ:1.00 O C:HOH601 2.1 19.5 1.0 OE2 C:GLU90 2.2 19.6 1.0 O C:ASP391 2.2 24.0 1.0 O C:VAL396 2.5 20.9 1.0 O C:GLY394 2.6 21.6 1.0 H1 C:HOH601 2.6 19.9 1.0 OE2 C:GLU398 2.7 20.9 1.0 H2 C:HOH601 2.7 19.8 1.0 CD C:GLU90 3.3 21.5 1.0 C C:ASP391 3.4 19.6 1.0 C C:VAL396 3.6 17.4 1.0 N C:VAL396 3.7 19.4 1.0 CD C:GLU398 3.8 19.7 1.0 C C:GLY394 3.8 20.1 1.0 CG C:GLU90 4.0 20.6 1.0 CB C:ASP391 4.0 19.3 1.0 CB C:ASN395 4.1 19.1 1.0 CA C:ASP391 4.3 17.7 1.0 CA C:VAL396 4.3 16.6 1.0 CG C:GLU398 4.3 18.7 1.0 OE1 C:GLU90 4.3 25.9 1.0 NH2 C:ARG468 4.3 15.4 1.0 C C:MET392 4.3 19.9 1.0 N C:MET392 4.3 20.5 1.0 CA C:MET392 4.3 17.8 1.0 CG2 C:VAL396 4.4 17.0 1.0 O C:GLY439 4.4 22.6 1.0 N C:GLY394 4.5 20.0 1.0 O C:MET392 4.6 24.4 1.0 N C:ALA393 4.6 21.2 1.0 C C:ALA393 4.6 21.0 1.0 C C:ASN395 4.7 18.0 1.0 N C:ALA397 4.7 18.0 1.0 N C:ASN395 4.7 18.3 1.0 CA C:ASN395 4.7 17.4 1.0 CA C:GLY394 4.8 17.8 1.0 OE1 C:GLU398 4.8 23.3 1.0 O C:ALA393 4.9 21.7 1.0 CA C:ALA397 5.0 16.2 1.0

Calcium binding site 3 out of 3 in the Structure of Porkn From Porphyromonas Gingivalis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Porkn From Porphyromonas Gingivalis within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca501 b:19.0 occ:1.00 O E:HOH601 2.0 16.4 1.0 OE2 E:GLU90 2.2 15.7 1.0 O E:ASP391 2.2 20.9 1.0 O E:GLY394 2.3 16.1 1.0 H1 E:HOH601 2.5 17.1 1.0 O E:VAL396 2.6 16.9 1.0 OE2 E:GLU398 2.7 18.9 1.0 H2 E:HOH601 2.8 17.4 1.0 CD E:GLU90 3.3 15.8 1.0 C E:ASP391 3.4 15.2 1.0 N E:VAL396 3.5 14.4 1.0 C E:GLY394 3.6 15.0 1.0 C E:VAL396 3.7 13.4 1.0 CB E:ASP391 3.8 13.2 1.0 CB E:ASN395 3.8 16.2 1.0 CD E:GLU398 3.9 19.1 1.0 CG E:GLU90 4.1 15.8 1.0 CA E:ASP391 4.1 14.4 1.0 CA E:VAL396 4.2 13.8 1.0 CG2 E:VAL396 4.2 14.9 1.0 NH2 E:ARG468 4.3 14.6 1.0 OE1 E:GLU90 4.3 17.8 1.0 N E:GLY394 4.4 18.9 1.0 C E:MET392 4.4 18.5 1.0 N E:MET392 4.4 14.9 1.0 C E:ASN395 4.4 13.7 1.0 N E:ASN395 4.4 13.4 1.0 CA E:ASN395 4.4 14.5 1.0 O E:GLY439 4.4 18.2 1.0 CA E:MET392 4.5 14.0 1.0 C E:ALA393 4.5 19.4 1.0 CA E:GLY394 4.6 14.6 1.0 O E:MET392 4.6 23.6 1.0 CG E:GLU398 4.6 18.2 1.0 N E:ALA393 4.7 19.5 1.0 O E:ALA393 4.8 20.3 1.0 N E:ALA397 4.8 15.8 1.0 OE1 E:GLU398 4.9 22.3 1.0 CB E:VAL396 4.9 12.3 1.0

X.Liu, M.Avaramova, J.C.Deme, C.Lundgren, R.M.Jones, S.M.Lea, B.C.Berks. A Central Role For Disulfide Bonds in Bacteroidota Protein Transportation and Gliding Motility To Be Published.