Calcium in PDB 9odv: Microed Structure of Proteinase K Without Energy Filtering

All present enzymatic activity of Microed Structure of Proteinase K Without Energy Filtering:
3.4.21.64;

The binding sites of Calcium atom in the Microed Structure of Proteinase K Without Energy Filtering (pdb code 9odv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Microed Structure of Proteinase K Without Energy Filtering, PDB code: 9odv:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Microed Structure of Proteinase K Without Energy Filtering


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Microed Structure of Proteinase K Without Energy Filtering within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:7.1 occ:1.00 O A:HOH631 2.3 12.3 1.0 O A:PRO280 2.4 7.1 1.0 O A:VAL282 2.4 7.0 1.0 O A:HOH609 2.5 9.2 1.0 OD2 A:ASP305 2.5 7.2 1.0 O A:HOH581 2.6 10.7 1.0 O A:HOH739 2.6 11.6 1.0 OD1 A:ASP305 2.7 8.0 1.0 CG A:ASP305 2.9 7.1 1.0 C A:PRO280 3.5 7.6 1.0 C A:VAL282 3.6 6.2 1.0 N A:VAL282 4.2 6.0 1.0 CA A:PRO280 4.2 8.1 1.0 O A:VAL303 4.3 8.3 1.0 C A:SER281 4.4 6.4 1.0 CB A:ASP305 4.4 7.9 1.0 N A:SER281 4.5 6.9 1.0 O A:GLU279 4.5 6.5 1.0 CA A:CYS283 4.5 6.5 1.0 N A:CYS283 4.5 6.3 1.0 O A:HOH823 4.5 26.9 1.0 CA A:VAL282 4.6 6.3 1.0 O A:HOH628 4.6 13.6 1.0 N A:THR284 4.6 6.9 1.0 CA A:SER281 4.7 6.5 1.0 O A:HOH740 4.7 35.3 1.0 O A:HOH796 4.8 24.2 1.0 OG1 A:THR284 4.9 6.9 1.0 SG A:CYS354 4.9 7.7 1.0

Calcium binding site 2 out of 2 in the Microed Structure of Proteinase K Without Energy Filtering


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Microed Structure of Proteinase K Without Energy Filtering within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:18.3 occ:1.00 O A:HOH701 2.1 22.2 1.0 OD1 A:ASP365 2.4 14.8 1.0 O A:THR121 2.4 13.7 1.0 O A:HOH640 2.4 16.0 1.0 OD2 A:ASP365 2.4 15.8 1.0 O A:HOH736 2.5 29.9 1.0 CG A:ASP365 2.7 15.1 1.0 O A:HOH749 2.7 29.4 1.0 C A:THR121 3.6 13.0 1.0 CB A:ASP365 4.2 14.2 1.0 O A:HOH575 4.3 21.1 1.0 O A:HOH605 4.3 37.8 1.0 CA A:THR121 4.4 13.0 1.0 CB A:THR121 4.4 13.7 1.0 N A:SER122 4.5 12.8 1.0 CA A:SER122 4.5 13.7 1.0 OD1 A:ASN362 4.5 11.0 1.0 NH2 A:ARG117 4.6 11.0 1.0 O A:HOH864 4.8 41.8 1.0 CG A:ASN362 4.8 11.2 1.0 O A:HOH530 4.8 12.5 1.0 CB A:ASN362 5.0 11.2 1.0

M.T.B.Clabbers, T.Gonen. Recovering High-Resolution Information Using Energy Filtering in Microed. Struct Dyn. V. 12 34702 2025.
ISSN: ESSN 2329-7778
PubMed: 40370641
DOI: 10.1063/4.0000755