Calcium in PDB 1ann: Annexin IV
Protein crystallography data
The structure of Annexin IV, PDB code: 1ann
was solved by
R.B.Sutton,
S.R.Sprang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.30
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
33.312,
124.709,
49.439,
90.00,
110.28,
90.00
|
R / Rfree (%)
|
24.9 /
18.6
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Annexin IV
(pdb code 1ann). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Annexin IV, PDB code: 1ann:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 1ann
Go back to
Calcium Binding Sites List in 1ann
Calcium binding site 1 out
of 2 in the Annexin IV
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Annexin IV within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca319
b:17.5
occ:1.00
|
O
|
A:GLY261
|
2.4
|
16.4
|
1.0
|
O
|
A:MET257
|
2.4
|
11.8
|
1.0
|
O
|
A:GLY259
|
2.4
|
18.8
|
1.0
|
OD1
|
A:ASP301
|
2.5
|
19.8
|
1.0
|
O
|
A:HOH379B
|
2.6
|
24.6
|
1.0
|
OD2
|
A:ASP301
|
2.6
|
12.5
|
1.0
|
CG
|
A:ASP301
|
2.9
|
13.1
|
1.0
|
C
|
A:MET257
|
3.5
|
10.9
|
1.0
|
C
|
A:GLY261
|
3.5
|
14.3
|
1.0
|
C
|
A:GLY259
|
3.6
|
16.7
|
1.0
|
N
|
A:GLY261
|
3.9
|
10.3
|
1.0
|
CA
|
A:MET257
|
4.1
|
8.6
|
1.0
|
N
|
A:GLY259
|
4.2
|
15.1
|
1.0
|
CA
|
A:GLY261
|
4.2
|
10.8
|
1.0
|
C
|
A:LEU260
|
4.2
|
12.6
|
1.0
|
OG1
|
A:THR262
|
4.3
|
9.8
|
1.0
|
C
|
A:LYS258
|
4.3
|
13.0
|
1.0
|
CB
|
A:ASP301
|
4.4
|
15.8
|
1.0
|
CA
|
A:GLY259
|
4.5
|
15.2
|
1.0
|
N
|
A:LEU260
|
4.5
|
17.0
|
1.0
|
N
|
A:LYS258
|
4.5
|
14.5
|
1.0
|
N
|
A:THR262
|
4.6
|
13.0
|
1.0
|
CA
|
A:LEU260
|
4.6
|
17.0
|
1.0
|
O
|
A:LYS258
|
4.7
|
14.1
|
1.0
|
CB
|
A:MET257
|
4.7
|
11.2
|
1.0
|
O
|
A:HOH417B
|
4.8
|
44.1
|
1.0
|
CA
|
A:LYS258
|
4.8
|
16.8
|
1.0
|
CA
|
A:THR262
|
4.8
|
10.0
|
1.0
|
O
|
A:HOH418A
|
4.8
|
49.0
|
1.0
|
O
|
A:LEU260
|
4.9
|
10.0
|
1.0
|
O
|
A:HOH356A
|
4.9
|
17.6
|
1.0
|
|
Calcium binding site 2 out
of 2 in 1ann
Go back to
Calcium Binding Sites List in 1ann
Calcium binding site 2 out
of 2 in the Annexin IV
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Annexin IV within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca320
b:26.5
occ:1.00
|
O
|
A:GLY30
|
2.3
|
23.5
|
1.0
|
O
|
A:GLY28
|
2.3
|
24.6
|
1.0
|
O
|
A:MET26
|
2.4
|
24.4
|
1.0
|
OE2
|
A:GLU70
|
2.6
|
27.9
|
1.0
|
O
|
A:HOH366A
|
2.6
|
33.9
|
1.0
|
OE1
|
A:GLU70
|
2.7
|
22.4
|
1.0
|
O
|
A:HOH324B
|
2.7
|
34.2
|
1.0
|
CD
|
A:GLU70
|
3.0
|
21.3
|
1.0
|
C
|
A:GLY30
|
3.5
|
26.7
|
1.0
|
C
|
A:GLY28
|
3.5
|
24.1
|
1.0
|
C
|
A:MET26
|
3.5
|
26.2
|
1.0
|
N
|
A:GLY30
|
3.7
|
31.7
|
1.0
|
N
|
A:GLY28
|
4.1
|
28.1
|
1.0
|
CA
|
A:GLY30
|
4.1
|
29.1
|
1.0
|
C
|
A:LEU29
|
4.2
|
27.7
|
1.0
|
C
|
A:LYS27
|
4.2
|
29.1
|
1.0
|
OG1
|
A:THR31
|
4.2
|
24.2
|
1.0
|
CA
|
A:MET26
|
4.3
|
24.0
|
1.0
|
CA
|
A:GLY28
|
4.4
|
23.8
|
1.0
|
N
|
A:LEU29
|
4.4
|
24.2
|
1.0
|
CA
|
A:LEU29
|
4.5
|
27.1
|
1.0
|
CG
|
A:GLU70
|
4.5
|
19.8
|
1.0
|
O
|
A:LYS27
|
4.5
|
30.7
|
1.0
|
N
|
A:THR31
|
4.5
|
25.7
|
1.0
|
N
|
A:LYS27
|
4.5
|
28.0
|
1.0
|
O
|
A:HOH368A
|
4.6
|
36.3
|
1.0
|
O
|
A:HOH387A
|
4.6
|
45.9
|
1.0
|
CA
|
A:LYS27
|
4.7
|
30.1
|
1.0
|
O
|
A:HOH391A
|
4.7
|
36.2
|
1.0
|
CA
|
A:THR31
|
4.8
|
21.9
|
1.0
|
CB
|
A:MET26
|
4.8
|
18.7
|
1.0
|
O
|
A:LEU29
|
5.0
|
24.8
|
1.0
|
|
Reference:
R.B.Sutton,
S.R.Sprang.
Three Dimensional Structure of Annexin IV Annexins: Molecular 1996STRUCTURE to Cellularfunction.
Page generated: Thu Jul 11 05:59:24 2024
|