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Calcium in PDB 1anx: The Crystal Structure of A New High-Calcium Form of Annexin V

Protein crystallography data

The structure of The Crystal Structure of A New High-Calcium Form of Annexin V, PDB code: 1anx was solved by J.Sopkova, M.Renouard, A.Lewit-Bentley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 91.200, 91.300, 36.200, 82.40, 82.40, 118.20
R / Rfree (%) n/a / n/a

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Calcium atom in the The Crystal Structure of A New High-Calcium Form of Annexin V (pdb code 1anx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the The Crystal Structure of A New High-Calcium Form of Annexin V, PDB code: 1anx:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 12 in 1anx

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Calcium binding site 1 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca321

b:13.7
occ:1.00
 O A:LYS186 2.3 13.6 1.0
O A:GLY183 2.4 11.2 1.0
O A:GLY188 2.4 10.7 1.0
O A:HOH326 2.5 11.7 1.0
OE1 A:GLU228 2.5 10.3 1.0
OE2 A:GLU228 2.7 19.7 1.0
O1 A:SO4322 2.7 44.2 1.0
O4 A:SO4322 2.7 46.1 1.0
CD A:GLU228 3.0 13.2 1.0
S A:SO4322 3.4 40.4 1.0
C A:GLY183 3.4 6.7 1.0
C A:LYS186 3.5 10.2 1.0
C A:GLY188 3.5 10.2 1.0
N A:GLY188 3.7 14.3 1.0
O3 A:SO4322 4.1 44.2 1.0
CA A:GLY183 4.1 4.5 1.0
CA A:GLY188 4.2 12.4 1.0
CA A:LYS186 4.2 9.6 1.0
CB A:LYS186 4.2 12.5 1.0
N A:LYS186 4.3 12.3 1.0
OG1 A:THR189 4.3 16.9 1.0
N A:GLU184 4.3 9.0 1.0
O A:GLU184 4.4 12.2 1.0
CG A:GLU228 4.4 11.1 1.0
O A:HOH338 4.4 19.8 1.0
N A:THR189 4.5 11.5 1.0
O A:HOH435 4.5 44.1 1.0
N A:TRP187 4.5 8.0 1.0
CA A:GLU184 4.5 9.2 1.0
O2 A:SO4322 4.5 44.4 1.0
C A:GLU184 4.5 10.9 1.0
C A:TRP187 4.5 15.6 1.0
CA A:TRP187 4.7 10.4 1.0
O A:HOH449 4.7 33.0 1.0
CA A:THR189 4.7 11.5 1.0
CG A:LYS186 5.0 13.8 1.0

Calcium binding site 2 out of 12 in 1anx

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Calcium binding site 2 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca323

b:30.7
occ:0.75
 O A:MET28 2.2 35.3 1.0
O A:GLY32 2.3 33.9 1.0
O A:GLY30 2.4 44.6 1.0
OE1 A:GLU72 2.6 34.8 1.0
OE2 A:GLU72 2.7 36.8 1.0
CD A:GLU72 2.9 37.3 1.0
C A:MET28 3.3 34.5 1.0
C A:GLY32 3.4 40.0 1.0
C A:GLY30 3.6 46.6 1.0
N A:GLY32 4.0 44.5 1.0
CA A:MET28 4.0 32.7 1.0
N A:GLY30 4.2 43.1 1.0
OG1 A:THR33 4.2 32.9 1.0
CA A:GLY32 4.3 42.5 1.0
C A:LEU31 4.3 47.1 1.0
N A:THR33 4.4 39.8 1.0
C A:LYS29 4.4 39.3 1.0
CG A:GLU72 4.4 38.8 1.0
N A:LYS29 4.4 35.6 1.0
O A:HOH377 4.5 37.7 1.0
CB A:MET28 4.5 33.2 1.0
CA A:GLY30 4.5 45.2 1.0
N A:LEU31 4.6 48.6 1.0
O A:LYS29 4.6 42.5 1.0
CA A:LEU31 4.7 47.8 1.0
CA A:THR33 4.8 34.9 1.0
CA A:LYS29 4.8 38.9 1.0
O A:LEU31 4.9 47.9 1.0

Calcium binding site 3 out of 12 in 1anx

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Calcium binding site 3 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca324

b:31.8
occ:0.50
 O A:LYS70 2.1 31.6 1.0
O A:LEU73 2.3 33.8 1.0
OE2 A:GLU78 2.6 38.8 1.0
C A:LYS70 3.4 30.5 1.0
C A:LEU73 3.5 32.0 1.0
CD A:GLU78 3.8 35.9 1.0
CG A:GLU78 4.1 33.8 1.0
CA A:LYS70 4.1 27.4 1.0
CA A:THR74 4.2 34.0 1.0
N A:SER71 4.3 32.0 1.0
CA A:SER71 4.4 32.1 1.0
N A:THR74 4.4 33.8 1.0
N A:LEU73 4.5 33.1 1.0
CA A:LEU73 4.6 33.1 1.0
C A:SER71 4.6 30.0 1.0
CB A:LYS70 4.7 27.9 1.0
CB A:THR74 4.8 34.4 1.0
O A:SER71 4.8 35.6 1.0
OE1 A:GLU78 4.8 41.2 1.0
CB A:GLU78 4.9 31.8 1.0
O A:LEU69 5.0 31.3 1.0

Calcium binding site 4 out of 12 in 1anx

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Calcium binding site 4 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca325

b:33.7
occ:0.50
 O A:ASP226 2.5 19.6 1.0
O A:THR229 2.9 25.6 1.0
OD1 A:ASP226 2.9 40.0 1.0
OE1 A:GLU234 2.9 22.1 1.0
CD A:GLU234 3.2 19.2 1.0
OE2 A:GLU234 3.4 23.8 1.0
C A:ASP226 3.5 16.1 1.0
CG A:ASP226 3.6 33.0 1.0
CA A:ASP226 3.8 17.5 1.0
C A:THR229 4.1 24.0 1.0
CG A:GLU234 4.3 20.1 1.0
OD2 A:ASP226 4.3 36.0 1.0
CB A:ASP226 4.4 25.1 1.0
CA A:SER230 4.6 25.6 1.0
O A:ILE225 4.7 13.9 1.0
N A:SER230 4.7 25.7 1.0
N A:ARG227 4.7 19.3 1.0

Calcium binding site 5 out of 12 in 1anx

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Calcium binding site 5 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca321

b:11.9
occ:1.00
 O3 B:SO4322 2.1 50.0 1.0
O B:GLY183 2.2 8.6 1.0
OE1 B:GLU228 2.3 12.1 1.0
O4 B:SO4322 2.4 49.1 1.0
OE2 B:GLU228 2.4 17.0 1.0
O B:GLY188 2.5 11.3 1.0
O B:HOH345 2.6 15.1 1.0
O B:LYS186 2.6 12.0 1.0
CD B:GLU228 2.7 15.4 1.0
S B:SO4322 2.8 48.1 1.0
C B:GLY183 3.3 5.2 1.0
C B:GLY188 3.5 13.5 1.0
C B:LYS186 3.8 11.5 1.0
N B:GLY188 3.8 13.1 1.0
O1 B:SO4322 3.9 48.5 1.0
O2 B:SO4322 3.9 50.8 1.0
CA B:GLY183 4.0 4.6 1.0
OG1 B:THR189 4.1 19.2 1.0
CG B:GLU228 4.1 12.5 1.0
O B:HOH361 4.2 23.6 1.0
N B:GLU184 4.2 8.6 1.0
CA B:GLY188 4.3 13.4 1.0
CA B:LYS186 4.4 10.0 1.0
N B:LYS186 4.4 10.8 1.0
CB B:LYS186 4.4 12.8 1.0
CA B:GLU184 4.5 8.2 1.0
O B:HOH363 4.5 37.7 1.0
N B:THR189 4.5 13.4 1.0
O B:GLU184 4.5 12.9 1.0
C B:TRP187 4.6 15.8 1.0
C B:GLU184 4.7 7.8 1.0
CA B:THR189 4.7 13.7 1.0
O B:HOH382 4.7 39.2 1.0
N B:TRP187 4.8 7.0 1.0
CB B:GLU228 4.9 11.8 1.0
CA B:TRP187 4.9 11.0 1.0
CB B:THR189 4.9 14.4 1.0

Calcium binding site 6 out of 12 in 1anx

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Calcium binding site 6 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca323

b:31.4
occ:0.75
 O B:GLY32 2.3 35.6 1.0
O B:MET28 2.4 34.9 1.0
OE1 B:GLU72 2.4 28.2 1.0
OE2 B:GLU72 2.6 33.9 1.0
O B:GLY30 2.7 46.5 1.0
CD B:GLU72 2.8 32.1 1.0
O B:HOH441 3.0 35.8 1.0
C B:GLY32 3.3 41.2 1.0
C B:MET28 3.5 33.4 1.0
C B:GLY30 3.7 47.1 1.0
N B:GLY32 3.9 45.7 1.0
CA B:MET28 4.0 31.6 1.0
CA B:GLY32 4.2 43.0 1.0
C B:LEU31 4.3 48.8 1.0
N B:THR33 4.3 40.1 1.0
OG1 B:THR33 4.3 33.8 1.0
CG B:GLU72 4.3 32.0 1.0
C B:LYS29 4.4 40.7 1.0
N B:LEU31 4.4 49.0 1.0
O B:LYS29 4.4 41.7 1.0
O B:HOH375 4.5 37.9 1.0
N B:GLY30 4.5 43.2 1.0
CB B:MET28 4.6 30.8 1.0
N B:LYS29 4.6 35.4 1.0
CA B:GLY30 4.6 45.1 1.0
CA B:LEU31 4.7 49.5 1.0
CA B:THR33 4.7 35.4 1.0
O B:LEU31 4.8 50.8 1.0
CA B:LYS29 5.0 39.1 1.0

Calcium binding site 7 out of 12 in 1anx

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Calcium binding site 7 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca324

b:30.6
occ:0.50
 O B:LYS70 2.2 32.9 1.0
O B:LEU73 2.3 30.0 1.0
OE2 B:GLU78 2.3 46.0 1.0
O B:HOH455 2.8 48.2 1.0
C B:LYS70 3.4 30.2 1.0
CD B:GLU78 3.5 43.0 1.0
C B:LEU73 3.6 30.6 1.0
CG B:GLU78 4.1 39.3 1.0
CA B:LYS70 4.1 27.5 1.0
CA B:THR74 4.3 32.7 1.0
N B:SER71 4.4 32.5 1.0
N B:THR74 4.4 32.2 1.0
OE1 B:GLU78 4.5 47.6 1.0
CA B:SER71 4.5 31.5 1.0
N B:LEU73 4.7 33.4 1.0
C B:SER71 4.7 31.0 1.0
CA B:LEU73 4.7 31.6 1.0
CB B:LYS70 4.7 29.4 1.0
O B:SER71 4.8 37.0 1.0
CB B:THR74 4.8 34.2 1.0
CB B:GLU78 4.9 33.4 1.0

Calcium binding site 8 out of 12 in 1anx

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Calcium binding site 8 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca325

b:37.2
occ:0.50
 O B:ASP226 2.5 21.2 1.0
O B:THR229 2.8 24.4 1.0
OD1 B:ASP226 3.0 37.0 1.0
OE1 B:GLU234 3.0 26.0 1.0
CD B:GLU234 3.2 25.5 1.0
OE2 B:GLU234 3.3 30.8 1.0
C B:ASP226 3.4 18.5 1.0
CA B:ASP226 3.8 19.0 1.0
CG B:ASP226 3.9 34.7 1.0
C B:THR229 4.0 24.6 1.0
CG B:GLU234 4.3 23.8 1.0
CB B:ASP226 4.5 25.1 1.0
O B:ILE225 4.6 12.2 1.0
CA B:SER230 4.6 27.2 1.0
N B:ARG227 4.7 21.6 1.0
OD2 B:ASP226 4.7 41.8 1.0
N B:SER230 4.8 26.0 1.0

Calcium binding site 9 out of 12 in 1anx

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Calcium binding site 9 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca321

b:12.0
occ:1.00
 O C:GLY183 2.2 9.6 1.0
O4 C:SO4322 2.3 47.0 1.0
O C:GLY188 2.4 10.7 1.0
O C:LYS186 2.4 12.5 1.0
O C:HOH333 2.5 15.2 1.0
OE2 C:GLU228 2.5 18.5 1.0
OE1 C:GLU228 2.5 14.8 1.0
O3 C:SO4322 2.6 47.6 1.0
CD C:GLU228 2.9 16.1 1.0
S C:SO4322 3.0 43.1 1.0
C C:GLY183 3.3 5.7 1.0
C C:GLY188 3.5 14.6 1.0
C C:LYS186 3.6 13.0 1.0
N C:GLY188 3.7 14.4 1.0
O1 C:SO4322 3.8 46.8 1.0
CA C:GLY183 4.1 5.5 1.0
OG1 C:THR189 4.2 18.2 1.0
CA C:LYS186 4.3 12.3 1.0
O2 C:SO4322 4.3 45.2 1.0
N C:GLU184 4.3 7.3 1.0
CA C:GLY188 4.3 13.0 1.0
N C:LYS186 4.3 11.8 1.0
CG C:GLU228 4.3 13.1 1.0
O C:HOH360 4.3 23.5 1.0
O C:GLU184 4.4 11.6 1.0
CB C:LYS186 4.4 10.6 1.0
N C:THR189 4.5 12.8 1.0
CA C:GLU184 4.5 8.4 1.0
C C:TRP187 4.5 14.0 1.0
C C:GLU184 4.6 9.7 1.0
N C:TRP187 4.6 7.5 1.0
O C:HOH441 4.6 34.0 1.0
CA C:TRP187 4.7 9.5 1.0
CA C:THR189 4.7 12.9 1.0

Calcium binding site 10 out of 12 in 1anx

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Calcium binding site 10 out of 12 in the The Crystal Structure of A New High-Calcium Form of Annexin V


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of The Crystal Structure of A New High-Calcium Form of Annexin V within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca323

b:30.6
occ:0.75
 O C:MET28 2.2 35.1 1.0
O C:GLY32 2.2 37.6 1.0
OE1 C:GLU72 2.5 33.5 1.0
OE2 C:GLU72 2.5 37.0 1.0
O C:GLY30 2.7 43.3 1.0
O C:HOH385 2.8 44.7 1.0
CD C:GLU72 2.8 34.7 1.0
C C:MET28 3.3 33.9 1.0
C C:GLY32 3.3 40.9 1.0
C C:GLY30 3.7 43.3 1.0
N C:GLY32 3.9 42.3 1.0
CA C:MET28 4.0 32.2 1.0
CA C:GLY32 4.3 40.9 1.0
CG C:GLU72 4.3 35.6 1.0
C C:LEU31 4.3 44.8 1.0
N C:THR33 4.3 39.5 1.0
C C:LYS29 4.3 36.6 1.0
O C:HOH437 4.3 39.0 1.0
N C:GLY30 4.4 40.2 1.0
OG1 C:THR33 4.4 37.4 1.0
N C:LYS29 4.4 36.3 1.0
O C:LYS29 4.4 34.2 1.0
N C:LEU31 4.5 46.0 1.0
CA C:GLY30 4.6 42.8 1.0
CB C:MET28 4.6 34.7 1.0
CA C:LEU31 4.7 45.2 1.0
CA C:THR33 4.7 34.0 1.0
CA C:LYS29 4.8 36.1 1.0
O C:LEU31 4.9 45.0 1.0

Reference:

J.Sopkova, M.Renouard, A.Lewit-Bentley. The Crystal Structure of A New High-Calcium Form of Annexin V. J.Mol.Biol. V. 234 816 1993.
ISSN: ISSN 0022-2836
PubMed: 8254674
DOI: 10.1006/JMBI.1993.1627
Page generated: Thu Jul 11 06:00:03 2024

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