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Calcium in PDB 1aqm: Alpha-Amylase From Alteromonas Haloplanctis Complexed with Tris

Enzymatic activity of Alpha-Amylase From Alteromonas Haloplanctis Complexed with Tris

All present enzymatic activity of Alpha-Amylase From Alteromonas Haloplanctis Complexed with Tris:
3.2.1.1;

Protein crystallography data

The structure of Alpha-Amylase From Alteromonas Haloplanctis Complexed with Tris, PDB code: 1aqm was solved by N.Aghajari, R.Haser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.00 / 1.85
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 71.400, 138.900, 115.700, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 18.6

Other elements in 1aqm:

The structure of Alpha-Amylase From Alteromonas Haloplanctis Complexed with Tris also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Alpha-Amylase From Alteromonas Haloplanctis Complexed with Tris (pdb code 1aqm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Alpha-Amylase From Alteromonas Haloplanctis Complexed with Tris, PDB code: 1aqm:

Calcium binding site 1 out of 1 in 1aqm

Go back to Calcium Binding Sites List in 1aqm
Calcium binding site 1 out of 1 in the Alpha-Amylase From Alteromonas Haloplanctis Complexed with Tris


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Alpha-Amylase From Alteromonas Haloplanctis Complexed with Tris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca800

b:14.7
occ:1.00
H2 A:HOH1108 1.6 0.0 1.0
H1 A:HOH1107 2.0 0.0 1.0
O A:HOH1091 2.4 14.1 1.0
OD1 A:ASN88 2.4 16.8 1.0
O A:HIS178 2.4 12.1 1.0
H2 A:HOH1107 2.5 0.0 1.0
OD2 A:ASP144 2.5 13.8 1.0
O A:HOH1108 2.5 15.5 1.0
H2 A:HOH1091 2.6 0.0 1.0
OD1 A:ASP144 2.6 14.5 1.0
O A:GLN135 2.6 13.7 1.0
O A:HOH1107 2.6 11.9 1.0
H1 A:HOH1108 2.9 0.0 1.0
CG A:ASP144 2.9 15.9 1.0
H1 A:HOH1091 3.1 0.0 1.0
C A:GLN135 3.5 14.5 1.0
CG A:ASN88 3.6 17.4 1.0
C A:HIS178 3.6 11.0 1.0
HD21 A:ASN88 3.8 0.0 1.0
HD1 A:HIS117 3.9 15.0 1.0
ND2 A:ASN88 4.2 12.8 1.0
CA A:GLN135 4.2 15.3 1.0
CB A:HIS178 4.2 11.4 1.0
O A:ASN88 4.3 13.8 1.0
CB A:ASP144 4.4 13.6 1.0
CA A:HIS178 4.4 11.5 1.0
CE1 A:HIS117 4.4 14.2 1.0
N A:ASN136 4.5 13.5 1.0
N A:VAL179 4.5 11.5 1.0
CG2 A:VAL179 4.5 10.3 1.0
ND1 A:HIS117 4.5 14.0 1.0
CA A:VAL179 4.6 10.8 1.0
O A:LEU145 4.6 17.1 1.0
CA A:ASN136 4.7 14.3 1.0
O A:CYS137 4.7 14.9 1.0
CB A:ASN88 4.7 15.2 1.0
O A:VAL134 4.9 14.4 1.0
CB A:GLN135 5.0 16.0 1.0
H1 A:HOH1017 5.0 0.0 1.0
HG1 A:THR147 5.0 15.0 1.0
O A:HOH1144 5.0 15.1 1.0

Reference:

N.Aghajari, G.Feller, C.Gerday, R.Haser. Crystal Structures of the Psychrophilic Alpha-Amylase From Alteromonas Haloplanctis in Its Native Form and Complexed with An Inhibitor. Protein Sci. V. 7 564 1998.
ISSN: ISSN 0961-8368
PubMed: 9541387
Page generated: Sat Dec 12 02:48:32 2020

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