Calcium in PDB 1aui: Human Calcineurin Heterodimer
Enzymatic activity of Human Calcineurin Heterodimer
All present enzymatic activity of Human Calcineurin Heterodimer:
3.1.3.16;
Protein crystallography data
The structure of Human Calcineurin Heterodimer, PDB code: 1aui
was solved by
C.R.Kissinger,
H.E.Parge,
D.R.Knighton,
L.A.Pelletier,
C.T.Lewis,
A.Tempczyk,
J.E.Villafranca,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
2.10
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.810,
104.340,
177.770,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.7 /
n/a
|
Other elements in 1aui:
The structure of Human Calcineurin Heterodimer also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Human Calcineurin Heterodimer
(pdb code 1aui). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
Human Calcineurin Heterodimer, PDB code: 1aui:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 1aui
Go back to
Calcium Binding Sites List in 1aui
Calcium binding site 1 out
of 4 in the Human Calcineurin Heterodimer
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Human Calcineurin Heterodimer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca500
b:49.2
occ:1.00
|
OD1
|
B:ASP32
|
1.8
|
0.0
|
1.0
|
OE2
|
B:GLU41
|
2.3
|
86.9
|
1.0
|
OD1
|
B:ASP30
|
2.4
|
39.2
|
1.0
|
OE1
|
B:GLU41
|
2.4
|
0.1
|
1.0
|
O
|
B:SER36
|
2.5
|
48.2
|
1.0
|
OG
|
B:SER34
|
2.5
|
48.3
|
1.0
|
CD
|
B:GLU41
|
2.7
|
43.9
|
1.0
|
CG
|
B:ASP32
|
2.9
|
38.6
|
1.0
|
OD2
|
B:ASP32
|
3.3
|
0.2
|
1.0
|
CB
|
B:SER34
|
3.6
|
61.8
|
1.0
|
C
|
B:SER36
|
3.6
|
34.5
|
1.0
|
CG
|
B:ASP30
|
3.6
|
46.7
|
1.0
|
N
|
B:SER34
|
4.0
|
48.1
|
1.0
|
N
|
B:ASP32
|
4.1
|
0.9
|
1.0
|
CB
|
B:ASP32
|
4.2
|
89.7
|
1.0
|
CG
|
B:GLU41
|
4.2
|
61.0
|
1.0
|
CA
|
B:SER34
|
4.3
|
45.5
|
1.0
|
CA
|
B:LEU37
|
4.3
|
38.0
|
1.0
|
OD2
|
B:ASP30
|
4.3
|
42.0
|
1.0
|
N
|
B:LEU37
|
4.4
|
54.7
|
1.0
|
N
|
B:SER36
|
4.4
|
60.7
|
1.0
|
OE2
|
B:GLU68
|
4.4
|
67.8
|
1.0
|
N
|
B:SER38
|
4.5
|
52.1
|
1.0
|
CA
|
B:ASP32
|
4.5
|
48.7
|
1.0
|
CA
|
B:ASP30
|
4.5
|
54.5
|
1.0
|
C
|
B:ASP32
|
4.6
|
65.7
|
1.0
|
N
|
B:LEU31
|
4.6
|
0.7
|
1.0
|
CA
|
B:SER36
|
4.6
|
53.0
|
1.0
|
N
|
B:ASN33
|
4.7
|
52.3
|
1.0
|
CB
|
B:ASP30
|
4.7
|
33.9
|
1.0
|
C
|
B:ASP30
|
4.7
|
57.0
|
1.0
|
C
|
B:LEU37
|
4.7
|
56.2
|
1.0
|
OG
|
B:SER36
|
4.7
|
97.3
|
0.0
|
N
|
B:GLY35
|
4.8
|
46.5
|
1.0
|
C
|
B:SER34
|
4.8
|
47.6
|
1.0
|
OG
|
B:SER38
|
4.8
|
48.6
|
1.0
|
CB
|
B:SER38
|
5.0
|
79.2
|
1.0
|
|
Calcium binding site 2 out
of 4 in 1aui
Go back to
Calcium Binding Sites List in 1aui
Calcium binding site 2 out
of 4 in the Human Calcineurin Heterodimer
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Human Calcineurin Heterodimer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca501
b:38.5
occ:1.00
|
O
|
B:GLU68
|
2.2
|
25.8
|
1.0
|
OD1
|
B:ASN66
|
2.2
|
55.6
|
1.0
|
OD1
|
B:ASP64
|
2.3
|
37.4
|
1.0
|
O
|
B:HOH585
|
2.4
|
33.4
|
1.0
|
OE1
|
B:GLU73
|
2.4
|
32.8
|
1.0
|
OE2
|
B:GLU73
|
2.5
|
29.9
|
1.0
|
OD1
|
B:ASP62
|
2.6
|
34.6
|
1.0
|
CD
|
B:GLU73
|
2.8
|
32.5
|
1.0
|
CG
|
B:ASP64
|
3.2
|
34.5
|
1.0
|
CG
|
B:ASN66
|
3.3
|
37.7
|
1.0
|
C
|
B:GLU68
|
3.4
|
31.1
|
1.0
|
CG
|
B:ASP62
|
3.5
|
36.6
|
1.0
|
OD2
|
B:ASP64
|
3.6
|
82.1
|
1.0
|
N
|
B:ASN66
|
4.0
|
47.4
|
1.0
|
N
|
B:GLU68
|
4.1
|
96.3
|
1.0
|
CA
|
B:ASP62
|
4.1
|
27.4
|
1.0
|
ND2
|
B:ASN66
|
4.1
|
57.6
|
1.0
|
CB
|
B:ASP62
|
4.1
|
26.9
|
1.0
|
CB
|
B:ASN66
|
4.3
|
48.7
|
1.0
|
N
|
B:VAL69
|
4.3
|
32.2
|
1.0
|
N
|
B:ASP64
|
4.3
|
45.6
|
1.0
|
CG
|
B:GLU73
|
4.3
|
31.8
|
1.0
|
CA
|
B:GLU68
|
4.4
|
33.9
|
1.0
|
CA
|
B:VAL69
|
4.4
|
49.1
|
1.0
|
C
|
B:ASP62
|
4.4
|
28.4
|
1.0
|
N
|
B:ASP70
|
4.5
|
31.6
|
1.0
|
OD2
|
B:ASP62
|
4.5
|
51.3
|
1.0
|
CB
|
B:ASP64
|
4.5
|
28.8
|
1.0
|
N
|
B:GLY65
|
4.5
|
36.0
|
1.0
|
CA
|
B:ASN66
|
4.6
|
64.4
|
1.0
|
N
|
B:GLY67
|
4.6
|
46.3
|
1.0
|
N
|
B:THR63
|
4.7
|
31.8
|
1.0
|
C
|
B:ASN66
|
4.8
|
36.1
|
1.0
|
CA
|
B:ASP64
|
4.8
|
44.8
|
1.0
|
C
|
B:ASP64
|
4.8
|
58.4
|
1.0
|
C
|
B:VAL69
|
4.9
|
37.3
|
1.0
|
O
|
B:ASP62
|
4.9
|
30.0
|
1.0
|
CB
|
B:GLU68
|
5.0
|
0.4
|
1.0
|
|
Calcium binding site 3 out
of 4 in 1aui
Go back to
Calcium Binding Sites List in 1aui
Calcium binding site 3 out
of 4 in the Human Calcineurin Heterodimer
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Human Calcineurin Heterodimer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca502
b:41.5
occ:1.00
|
OE2
|
B:GLU110
|
2.1
|
32.7
|
1.0
|
OD1
|
B:ASP103
|
2.1
|
67.4
|
1.0
|
O
|
B:TYR105
|
2.2
|
37.9
|
1.0
|
OD1
|
B:ASP99
|
2.4
|
32.6
|
1.0
|
OE1
|
B:GLU110
|
2.5
|
39.1
|
1.0
|
O
|
B:HOH755
|
2.5
|
49.2
|
1.0
|
CD
|
B:GLU110
|
2.6
|
38.1
|
1.0
|
OD1
|
B:ASP101
|
2.9
|
50.3
|
1.0
|
CG
|
B:ASP103
|
3.1
|
48.5
|
1.0
|
C
|
B:TYR105
|
3.4
|
26.1
|
1.0
|
CG
|
B:ASP101
|
3.4
|
42.1
|
1.0
|
OD2
|
B:ASP101
|
3.5
|
0.4
|
1.0
|
CG
|
B:ASP99
|
3.6
|
35.5
|
1.0
|
OD2
|
B:ASP103
|
3.6
|
1.0
|
1.0
|
CG
|
B:GLU110
|
4.1
|
22.9
|
1.0
|
CB
|
B:ASP103
|
4.2
|
52.6
|
1.0
|
N
|
B:ASP103
|
4.2
|
44.9
|
1.0
|
N
|
B:ASP101
|
4.2
|
61.0
|
1.0
|
N
|
B:TYR105
|
4.3
|
26.5
|
1.0
|
CA
|
B:ASP99
|
4.3
|
28.6
|
1.0
|
N
|
B:ILE106
|
4.3
|
42.4
|
1.0
|
CA
|
B:TYR105
|
4.3
|
24.4
|
1.0
|
OD2
|
B:ASP99
|
4.4
|
34.6
|
1.0
|
CA
|
B:ILE106
|
4.4
|
43.9
|
1.0
|
CB
|
B:ASP99
|
4.4
|
26.7
|
1.0
|
N
|
B:SER107
|
4.5
|
29.5
|
1.0
|
C
|
B:ASP99
|
4.5
|
31.8
|
1.0
|
CB
|
B:ASP101
|
4.6
|
0.4
|
1.0
|
CB
|
B:TYR105
|
4.6
|
40.9
|
1.0
|
CA
|
B:ASP103
|
4.7
|
28.2
|
1.0
|
N
|
B:MET100
|
4.7
|
31.6
|
1.0
|
CA
|
B:ASP101
|
4.7
|
33.6
|
1.0
|
N
|
B:LYS102
|
4.7
|
31.7
|
1.0
|
C
|
B:ILE106
|
4.8
|
35.1
|
1.0
|
C
|
B:ASP101
|
4.8
|
65.0
|
1.0
|
CB
|
B:SER107
|
4.8
|
27.1
|
1.0
|
O
|
B:ASP99
|
4.9
|
37.3
|
1.0
|
N
|
B:GLY104
|
4.9
|
41.9
|
1.0
|
OG
|
B:SER107
|
5.0
|
43.5
|
1.0
|
CB
|
B:GLU110
|
5.0
|
25.1
|
1.0
|
|
Calcium binding site 4 out
of 4 in 1aui
Go back to
Calcium Binding Sites List in 1aui
Calcium binding site 4 out
of 4 in the Human Calcineurin Heterodimer
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Human Calcineurin Heterodimer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca503
b:48.1
occ:1.00
|
OD1
|
B:ASP142
|
1.7
|
66.0
|
1.0
|
O
|
B:ARG146
|
2.1
|
34.5
|
1.0
|
OD1
|
B:ASP144
|
2.3
|
44.4
|
1.0
|
OD1
|
B:ASP140
|
2.4
|
36.0
|
1.0
|
OE1
|
B:GLU151
|
2.5
|
43.6
|
1.0
|
OE2
|
B:GLU151
|
2.8
|
44.3
|
1.0
|
CG
|
B:ASP142
|
2.8
|
0.8
|
1.0
|
O
|
B:HOH622
|
2.9
|
37.2
|
1.0
|
CD
|
B:GLU151
|
3.0
|
46.9
|
1.0
|
CG
|
B:ASP144
|
3.3
|
57.9
|
1.0
|
C
|
B:ARG146
|
3.3
|
25.8
|
1.0
|
CG
|
B:ASP140
|
3.4
|
29.5
|
1.0
|
OD2
|
B:ASP142
|
3.5
|
0.1
|
1.0
|
OD2
|
B:ASP144
|
3.7
|
56.8
|
1.0
|
N
|
B:ARG146
|
4.0
|
41.3
|
1.0
|
CB
|
B:ASP142
|
4.1
|
48.4
|
1.0
|
CA
|
B:ASP140
|
4.1
|
34.2
|
1.0
|
N
|
B:ASP142
|
4.1
|
0.7
|
1.0
|
CB
|
B:ASP140
|
4.1
|
28.8
|
1.0
|
N
|
B:ILE147
|
4.2
|
49.7
|
1.0
|
CA
|
B:ILE147
|
4.2
|
42.7
|
1.0
|
OD2
|
B:ASP140
|
4.3
|
48.4
|
1.0
|
N
|
B:ASP144
|
4.3
|
61.4
|
1.0
|
CA
|
B:ARG146
|
4.3
|
39.2
|
1.0
|
N
|
B:SER148
|
4.4
|
36.0
|
1.0
|
CA
|
B:ASP142
|
4.4
|
62.8
|
1.0
|
CB
|
B:ASP144
|
4.5
|
41.5
|
1.0
|
CG
|
B:GLU151
|
4.5
|
31.8
|
1.0
|
C
|
B:ASP140
|
4.5
|
37.7
|
1.0
|
CG
|
B:ARG146
|
4.6
|
43.2
|
1.0
|
N
|
B:GLY145
|
4.6
|
50.7
|
1.0
|
N
|
B:LYS141
|
4.6
|
45.5
|
1.0
|
N
|
B:GLY143
|
4.7
|
64.7
|
1.0
|
CA
|
B:ASP144
|
4.7
|
52.5
|
1.0
|
O
|
B:HOH793
|
4.7
|
52.6
|
1.0
|
CD1
|
B:ILE147
|
4.8
|
34.0
|
1.0
|
C
|
B:ILE147
|
4.8
|
31.1
|
1.0
|
C
|
B:ASP142
|
4.8
|
36.6
|
1.0
|
C
|
B:ASP144
|
4.9
|
32.2
|
1.0
|
|
Reference:
C.R.Kissinger,
H.E.Parge,
D.R.Knighton,
C.T.Lewis,
L.A.Pelletier,
A.Tempczyk,
V.J.Kalish,
K.D.Tucker,
R.E.Showalter,
E.W.Moomaw,
L.N.Gastinel,
N.Habuka,
X.Chen,
F.Maldonado,
J.E.Barker,
R.Bacquet,
J.E.Villafranca.
Crystal Structures of Human Calcineurin and the Human FKBP12-FK506-Calcineurin Complex. Nature V. 378 641 1995.
ISSN: ISSN 0028-0836
PubMed: 8524402
DOI: 10.1038/378641A0
Page generated: Thu Jul 11 06:07:04 2024
|