Calcium in PDB 1b1g: Solvated Refinement of Ca-Loaded Calbindin D9K

The binding sites of Calcium atom in the Solvated Refinement of Ca-Loaded Calbindin D9K (pdb code 1b1g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solvated Refinement of Ca-Loaded Calbindin D9K, PDB code: 1b1g:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solvated Refinement of Ca-Loaded Calbindin D9K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solvated Refinement of Ca-Loaded Calbindin D9K within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca76 b:0.0 occ:1.00 OD2 A:ASP19 2.3 0.0 1.0 OE2 A:GLU17 2.3 0.0 1.0 O A:ALA14 2.3 0.0 1.0 OE2 A:GLU27 2.4 0.0 1.0 O A:GLN22 2.4 0.0 1.0 OE1 A:GLU27 2.4 0.0 1.0 O A:ASP19 2.7 0.0 1.0 CD A:GLU27 2.7 0.0 1.0 HB3 A:ASP19 3.1 0.0 1.0 CD A:GLU17 3.3 0.0 1.0 CG A:ASP19 3.3 0.0 1.0 HG A:SER24 3.5 0.0 1.0 C A:ALA14 3.5 0.0 1.0 C A:GLN22 3.6 0.0 1.0 C A:ASP19 3.6 0.0 1.0 H A:GLN22 3.6 0.0 1.0 HG3 A:GLU17 3.6 0.0 1.0 H A:ASP19 3.6 0.0 1.0 CB A:ASP19 3.6 0.0 1.0 H A:GLU17 3.6 0.0 1.0 H A:SER24 3.7 0.0 1.0 HA A:ALA14 3.9 0.0 1.0 CA A:ASP19 4.0 0.0 1.0 HA A:ALA15 4.0 0.0 1.0 CG A:GLU17 4.0 0.0 1.0 OG A:SER24 4.0 0.0 1.0 HA A:LEU23 4.0 0.0 1.0 HB2 A:GLN22 4.1 0.0 1.0 N A:ASP19 4.1 0.0 1.0 N A:GLN22 4.2 0.0 1.0 OE1 A:GLU17 4.2 0.0 1.0 CG A:GLU27 4.3 0.0 1.0 CA A:ALA14 4.3 0.0 1.0 CA A:GLN22 4.4 0.0 1.0 H A:LYS16 4.4 0.0 1.0 OD1 A:ASP19 4.4 0.0 1.0 H A:ASN21 4.5 0.0 1.0 N A:GLU17 4.5 0.0 1.0 N A:ALA15 4.5 0.0 1.0 N A:LEU23 4.5 0.0 1.0 N A:SER24 4.5 0.0 1.0 HB3 A:ALA14 4.6 0.0 1.0 N A:PRO20 4.6 0.0 1.0 HB2 A:ASP19 4.7 0.0 1.0 CA A:ALA15 4.7 0.0 1.0 N A:ASN21 4.7 0.0 1.0 CA A:LEU23 4.7 0.0 1.0 HG2 A:GLU27 4.7 0.0 1.0 N A:LYS16 4.7 0.0 1.0 HG3 A:GLU27 4.7 0.0 1.0 HG2 A:GLU17 4.7 0.0 1.0 CB A:GLN22 4.8 0.0 1.0 HB2 A:GLU27 4.8 0.0 1.0 C A:PRO20 4.9 0.0 1.0 C A:ALA15 5.0 0.0 1.0 C A:GLU17 5.0 0.0 1.0 CA A:GLU17 5.0 0.0 1.0 HB3 A:GLU27 5.0 0.0 1.0 O A:TYR13 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Solvated Refinement of Ca-Loaded Calbindin D9K


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solvated Refinement of Ca-Loaded Calbindin D9K within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca77 b:0.0 occ:1.00 OD2 A:ASP54 2.3 0.0 1.0 OE2 A:GLU65 2.3 0.0 1.0 O A:GLU60 2.4 0.0 1.0 O A:GLY57 2.4 0.0 1.0 CG A:ASP54 3.1 0.0 1.0 OD1 A:ASP54 3.2 0.0 1.0 HA A:VAL61 3.2 0.0 1.0 C A:GLY57 3.4 0.0 1.0 CD A:GLU65 3.4 0.0 1.0 C A:GLU60 3.5 0.0 1.0 HA3 A:GLY57 3.8 0.0 1.0 H A:ASP58 3.9 0.0 1.0 H A:GLU60 4.0 0.0 1.0 OE1 A:GLU65 4.1 0.0 1.0 CA A:VAL61 4.1 0.0 1.0 CA A:GLY57 4.1 0.0 1.0 N A:ASP58 4.2 0.0 1.0 N A:VAL61 4.2 0.0 1.0 H A:GLY57 4.2 0.0 1.0 HG3 A:GLU65 4.2 0.0 1.0 HA A:ASP54 4.3 0.0 1.0 H A:GLY59 4.4 0.0 1.0 CB A:ASP54 4.4 0.0 1.0 CG A:GLU65 4.5 0.0 1.0 N A:GLU60 4.5 0.0 1.0 N A:GLY57 4.6 0.0 1.0 HB2 A:ASP54 4.6 0.0 1.0 CA A:GLU60 4.6 0.0 1.0 H A:LYS55 4.7 0.0 1.0 C A:VAL61 4.7 0.0 1.0 HG23 A:VAL61 4.8 0.0 1.0 H A:ASN56 4.9 0.0 1.0 CA A:ASP54 4.9 0.0 1.0 H A:SER62 4.9 0.0 1.0 HG2 A:GLU65 5.0 0.0 1.0

J.Kordel, D.A.Pearlman, W.J.Chazin. Protein Solution Structure Calculations in Solution: Solvated Molecular Dynamics Refinement of Calbindin D9K. J.Biomol.uc(Nmr) V. 10 231 1997.
ISSN: ISSN 0925-2738
PubMed: 9390401
DOI: 10.1023/A:1018383102870