Calcium in PDB 1bci: C2 Domain of Cytosolic Phospholipase A2, uc(Nmr), Minimized Average Structure

All present enzymatic activity of C2 Domain of Cytosolic Phospholipase A2, uc(Nmr), Minimized Average Structure:
3.1.1.4;

The binding sites of Calcium atom in the C2 Domain of Cytosolic Phospholipase A2, uc(Nmr), Minimized Average Structure (pdb code 1bci). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the C2 Domain of Cytosolic Phospholipase A2, uc(Nmr), Minimized Average Structure, PDB code: 1bci:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the C2 Domain of Cytosolic Phospholipase A2, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of C2 Domain of Cytosolic Phospholipase A2, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca139 b:1.1 occ:1.00 HB2 A:ASN64 2.3 1.0 1.0 HB3 A:ASP40 2.3 3.8 1.0 OD1 A:ASP43 2.6 1.0 1.0 O A:THR41 2.6 1.1 1.0 H A:ASN65 2.6 0.7 1.0 O A:ASP40 2.7 3.2 1.0 OD1 A:ASN65 2.8 1.2 1.0 C A:ASP40 3.0 2.5 1.0 CB A:ASP40 3.2 3.8 1.0 N A:ASN65 3.2 0.7 1.0 H A:ASP40 3.3 1.6 1.0 CA A:ASP40 3.3 2.8 1.0 CB A:ASN64 3.4 0.9 1.0 HB2 A:LEU39 3.4 1.9 1.0 N A:ASP40 3.4 1.9 1.0 CG A:ASP43 3.4 0.7 1.0 HB2 A:ASP40 3.6 4.0 1.0 HB3 A:ASN65 3.6 1.3 1.0 OD2 A:ASP43 3.6 1.1 1.0 C A:THR41 3.6 0.9 1.0 N A:THR41 3.7 1.6 1.0 CG A:ASN65 3.7 1.2 1.0 HB3 A:ASN64 3.8 0.9 1.0 HA A:ASN65 3.8 0.8 1.0 CA A:ASN65 3.9 0.8 1.0 CB A:ASN65 3.9 1.0 1.0 C A:ASN64 4.0 0.7 1.0 O A:GLY36 4.1 1.3 1.0 CA A:ASN64 4.1 0.7 1.0 HA A:ASN64 4.2 0.6 1.0 H A:THR41 4.2 1.7 1.0 C A:LEU39 4.3 1.8 1.0 CG A:ASN64 4.3 1.2 1.0 CA A:THR41 4.3 1.2 1.0 O A:PRO42 4.3 0.8 1.0 HA A:ASP40 4.4 3.4 1.0 CG A:ASP40 4.4 5.0 1.0 CB A:LEU39 4.5 1.5 1.0 C A:PRO42 4.5 0.6 1.0 HD11 A:LEU39 4.5 3.3 1.0 N A:PRO42 4.7 0.7 1.0 HB A:THR41 4.7 1.8 1.0 HA A:ASP43 4.8 0.6 1.0 HD21 A:ASN64 4.8 1.8 1.0 CB A:ASP43 4.8 0.6 1.0 N A:ASP43 4.8 0.5 1.0 OD1 A:ASN64 4.8 1.6 1.0 HA A:ASP37 4.8 1.2 1.0 OD2 A:ASP40 4.9 5.6 1.0 H A:LEU39 4.9 1.3 1.0 ND2 A:ASN64 4.9 1.5 1.0 HA A:PRO42 4.9 0.9 1.0 CA A:LEU39 4.9 1.3 1.0 O A:LEU39 4.9 2.6 1.0 CA A:PRO42 4.9 0.7 1.0 HB3 A:LEU39 4.9 1.6 1.0 ND2 A:ASN65 5.0 1.8 1.0

Calcium binding site 2 out of 2 in the C2 Domain of Cytosolic Phospholipase A2, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of C2 Domain of Cytosolic Phospholipase A2, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca140 b:1.3 occ:1.00 HB2 A:ASP43 2.3 0.6 1.0 HA A:ASN95 2.3 1.4 1.0 OD1 A:ASN95 2.6 1.7 1.0 OD2 A:ASP93 2.7 1.0 1.0 OD2 A:ASP43 2.7 1.1 1.0 O A:ALA94 2.8 1.1 1.0 CG A:ASP43 2.9 0.7 1.0 CB A:ASP43 3.1 0.6 1.0 CG A:ASN95 3.1 1.4 1.0 CA A:ASN95 3.2 1.4 1.0 C A:ALA94 3.4 1.1 1.0 N A:ASN95 3.5 1.2 1.0 CB A:ASN95 3.6 1.5 1.0 HB3 A:ASP43 3.7 0.6 1.0 H A:ASP43 3.7 0.6 1.0 OD1 A:ASP43 3.7 1.0 1.0 HB3 A:ASN95 3.8 1.7 1.0 CG A:ASP93 3.8 0.8 1.0 ND2 A:ASN95 4.0 1.8 1.0 HZ3 A:LYS32 4.1 2.9 1.0 N A:ASP43 4.2 0.5 1.0 CA A:ASP43 4.2 0.5 1.0 HD22 A:ASN95 4.2 1.8 1.0 HB3 A:ASP93 4.3 0.6 1.0 H A:ASN95 4.3 1.3 1.0 O A:ASP93 4.4 0.8 1.0 C A:ASP93 4.4 0.6 1.0 C A:ASN95 4.5 1.7 1.0 N A:ALA94 4.5 0.7 1.0 CA A:ALA94 4.5 1.0 1.0 O A:ASP43 4.6 0.7 1.0 CB A:ASP93 4.6 0.5 1.0 HB2 A:ASN95 4.6 1.5 1.0 HA2 A:GLY36 4.6 2.4 1.0 HD21 A:ASN95 4.7 2.2 1.0 H A:TYR96 4.7 2.0 1.0 OD1 A:ASP93 4.7 1.5 1.0 HA3 A:GLY36 4.8 2.0 1.0 HB3 A:ASN64 4.9 0.9 1.0 H A:ALA94 4.9 0.7 1.0 C A:ASP43 4.9 0.5 1.0

G.Y.Xu, T.Mcdonagh, H.A.Yu, E.A.Nalefski, J.D.Clark, D.A.Cumming. Solution Structure and Membrane Interactions of the C2 Domain of Cytosolic Phospholipase A2. J.Mol.Biol. V. 280 485 1998.
ISSN: ISSN 0022-2836
PubMed: 9665851
DOI: 10.1006/JMBI.1998.1874