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Calcium in PDB 1c3h: ACRP30 Calcium Complex

Protein crystallography data

The structure of ACRP30 Calcium Complex, PDB code: 1c3h was solved by L.Shapiro, T.Boggon, P.Scherer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.10
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 58.639, 58.711, 87.315, 70.55, 70.62, 60.14
R / Rfree (%) 19.8 / 24.8

Calcium Binding Sites:

The binding sites of Calcium atom in the ACRP30 Calcium Complex (pdb code 1c3h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the ACRP30 Calcium Complex, PDB code: 1c3h:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 1c3h

Go back to Calcium Binding Sites List in 1c3h
Calcium binding site 1 out of 3 in the ACRP30 Calcium Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of ACRP30 Calcium Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca8003

b:44.4
occ:1.00
OD1 D:ASP198 2.3 43.2 1.0
O E:GLN191 2.4 49.9 1.0
OD1 E:ASP190 2.4 42.9 1.0
OD2 E:ASP198 2.4 45.1 1.0
O D:VAL197 2.5 44.1 1.0
OD1 D:ASN196 2.5 53.6 1.0
CG D:ASN196 3.3 53.6 1.0
CG E:ASP198 3.4 44.1 1.0
C E:GLN191 3.5 49.5 1.0
ND2 D:ASN196 3.5 55.6 1.0
CG D:ASP198 3.5 43.9 1.0
C D:VAL197 3.5 45.5 1.0
CG E:ASP190 3.6 43.8 1.0
N E:GLN191 3.7 46.1 1.0
O D:HOH1206 3.7 43.4 1.0
O E:HOH1200 3.7 35.8 1.0
CA D:ASP198 3.9 43.4 1.0
O E:HOH1016 3.9 40.1 1.0
CB E:ASP198 4.0 41.6 1.0
CA E:GLN191 4.0 48.4 1.0
N D:ASP198 4.1 44.3 1.0
O D:ASN196 4.2 51.8 1.0
C D:ASN196 4.2 52.0 1.0
CB D:ASP198 4.3 43.5 1.0
OD2 E:ASP190 4.3 42.5 1.0
OD1 E:ASP198 4.3 42.4 1.0
C E:ASP190 4.3 43.9 1.0
OD2 D:ASP198 4.4 47.1 1.0
N D:VAL197 4.5 49.7 1.0
CB E:GLN191 4.5 48.8 1.0
CB D:ASN196 4.5 53.5 1.0
N E:TYR192 4.6 50.6 1.0
CA E:ASP190 4.6 42.9 1.0
CA D:VAL197 4.7 48.0 1.0
CB E:ASP190 4.7 42.7 1.0
CA D:ASN196 4.7 53.5 1.0
CA E:TYR192 4.9 52.3 1.0

Calcium binding site 2 out of 3 in 1c3h

Go back to Calcium Binding Sites List in 1c3h
Calcium binding site 2 out of 3 in the ACRP30 Calcium Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of ACRP30 Calcium Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca8002

b:40.7
occ:1.00
OD1 E:ASP198 2.3 42.4 1.0
OD2 F:ASP198 2.4 43.9 1.0
O F:GLN191 2.4 47.8 1.0
OD1 F:ASP190 2.4 44.0 1.0
O E:VAL197 2.4 42.6 1.0
OD1 E:ASN196 2.6 47.5 1.0
CG F:ASP198 3.4 43.1 1.0
CG E:ASP198 3.4 44.1 1.0
C F:GLN191 3.5 47.8 1.0
C E:VAL197 3.5 43.4 1.0
CG E:ASN196 3.5 48.2 1.0
CG F:ASP190 3.6 44.6 1.0
N F:GLN191 3.7 46.1 1.0
CA E:ASP198 3.8 41.7 1.0
O F:HOH1186 3.9 45.9 1.0
O D:HOH1206 3.9 43.4 1.0
O F:HOH1281 3.9 38.4 1.0
ND2 E:ASN196 3.9 49.7 1.0
N E:ASP198 4.0 42.1 1.0
CB F:ASP198 4.1 43.0 1.0
CA F:GLN191 4.1 47.1 1.0
O E:ASN196 4.2 46.3 1.0
C F:ASP190 4.2 44.8 1.0
CB E:ASP198 4.2 41.6 1.0
OD2 F:ASP190 4.2 44.8 1.0
C E:ASN196 4.2 47.1 1.0
OD1 F:ASP198 4.3 42.5 1.0
OD2 E:ASP198 4.3 45.1 1.0
N E:VAL197 4.5 45.5 1.0
CA F:ASP190 4.5 43.7 1.0
CB F:GLN191 4.5 47.4 1.0
N F:TYR192 4.6 48.3 1.0
CB F:ASP190 4.6 44.2 1.0
CA E:VAL197 4.7 44.9 1.0
CB E:ASN196 4.7 48.3 1.0
CA E:ASN196 4.8 48.7 1.0
O F:ASP190 4.8 45.4 1.0
CA F:TYR192 4.9 49.0 1.0
C E:ASP198 5.0 40.3 1.0

Calcium binding site 3 out of 3 in 1c3h

Go back to Calcium Binding Sites List in 1c3h
Calcium binding site 3 out of 3 in the ACRP30 Calcium Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of ACRP30 Calcium Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca8001

b:45.6
occ:1.00
OD1 F:ASP198 2.2 42.5 1.0
O D:GLN191 2.4 50.4 1.0
OD2 D:ASP198 2.4 47.1 1.0
OD2 D:ASP190 2.4 43.0 1.0
O F:VAL197 2.5 44.4 1.0
OD1 F:ASN196 2.7 44.1 1.0
CG F:ASP198 3.4 43.1 1.0
CG D:ASP198 3.4 43.9 1.0
CG F:ASN196 3.4 44.9 1.0
C F:VAL197 3.4 44.5 1.0
C D:GLN191 3.5 50.2 1.0
CG D:ASP190 3.6 43.2 1.0
ND2 F:ASN196 3.6 46.6 1.0
CA F:ASP198 3.6 43.3 1.0
N D:GLN191 3.7 46.0 1.0
O D:HOH1048 3.8 34.8 1.0
O D:HOH1001 3.9 43.2 1.0
N F:ASP198 3.9 44.0 1.0
CB F:ASP198 4.0 43.0 1.0
CA D:GLN191 4.1 48.8 1.0
CB D:ASP198 4.1 43.5 1.0
OD1 D:ASP198 4.2 43.2 1.0
O D:HOH1206 4.2 43.4 1.0
C F:ASN196 4.3 45.3 1.0
OD1 D:ASP190 4.3 42.3 1.0
O F:ASN196 4.3 44.3 1.0
OD2 F:ASP198 4.4 43.9 1.0
C D:ASP190 4.4 44.2 1.0
N F:VAL197 4.4 45.0 1.0
CB D:GLN191 4.5 49.0 1.0
CA F:VAL197 4.6 45.5 1.0
N D:TYR192 4.6 52.0 1.0
CB F:ASN196 4.6 45.5 1.0
CA D:ASP190 4.7 43.0 1.0
CA F:ASN196 4.7 46.3 1.0
CB D:ASP190 4.8 42.8 1.0
C F:ASP198 4.9 42.9 1.0
ND2 D:ASN196 4.9 55.6 1.0
CA D:TYR192 4.9 54.2 1.0

Reference:

T.Boggon, P.Scherer, L.Shapiro. ACRP30 Calcium Complex To Be Published.
Page generated: Mon Jul 7 13:52:33 2025

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