Calcium in PDB 1c3h: ACRP30 Calcium Complex
Protein crystallography data
The structure of ACRP30 Calcium Complex, PDB code: 1c3h
was solved by
L.Shapiro,
T.Boggon,
P.Scherer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
2.10
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
58.639,
58.711,
87.315,
70.55,
70.62,
60.14
|
R / Rfree (%)
|
19.8 /
24.8
|
Calcium Binding Sites:
The binding sites of Calcium atom in the ACRP30 Calcium Complex
(pdb code 1c3h). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the
ACRP30 Calcium Complex, PDB code: 1c3h:
Jump to Calcium binding site number:
1;
2;
3;
Calcium binding site 1 out
of 3 in 1c3h
Go back to
Calcium Binding Sites List in 1c3h
Calcium binding site 1 out
of 3 in the ACRP30 Calcium Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of ACRP30 Calcium Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca8003
b:44.4
occ:1.00
|
OD1
|
D:ASP198
|
2.3
|
43.2
|
1.0
|
O
|
E:GLN191
|
2.4
|
49.9
|
1.0
|
OD1
|
E:ASP190
|
2.4
|
42.9
|
1.0
|
OD2
|
E:ASP198
|
2.4
|
45.1
|
1.0
|
O
|
D:VAL197
|
2.5
|
44.1
|
1.0
|
OD1
|
D:ASN196
|
2.5
|
53.6
|
1.0
|
CG
|
D:ASN196
|
3.3
|
53.6
|
1.0
|
CG
|
E:ASP198
|
3.4
|
44.1
|
1.0
|
C
|
E:GLN191
|
3.5
|
49.5
|
1.0
|
ND2
|
D:ASN196
|
3.5
|
55.6
|
1.0
|
CG
|
D:ASP198
|
3.5
|
43.9
|
1.0
|
C
|
D:VAL197
|
3.5
|
45.5
|
1.0
|
CG
|
E:ASP190
|
3.6
|
43.8
|
1.0
|
N
|
E:GLN191
|
3.7
|
46.1
|
1.0
|
O
|
D:HOH1206
|
3.7
|
43.4
|
1.0
|
O
|
E:HOH1200
|
3.7
|
35.8
|
1.0
|
CA
|
D:ASP198
|
3.9
|
43.4
|
1.0
|
O
|
E:HOH1016
|
3.9
|
40.1
|
1.0
|
CB
|
E:ASP198
|
4.0
|
41.6
|
1.0
|
CA
|
E:GLN191
|
4.0
|
48.4
|
1.0
|
N
|
D:ASP198
|
4.1
|
44.3
|
1.0
|
O
|
D:ASN196
|
4.2
|
51.8
|
1.0
|
C
|
D:ASN196
|
4.2
|
52.0
|
1.0
|
CB
|
D:ASP198
|
4.3
|
43.5
|
1.0
|
OD2
|
E:ASP190
|
4.3
|
42.5
|
1.0
|
OD1
|
E:ASP198
|
4.3
|
42.4
|
1.0
|
C
|
E:ASP190
|
4.3
|
43.9
|
1.0
|
OD2
|
D:ASP198
|
4.4
|
47.1
|
1.0
|
N
|
D:VAL197
|
4.5
|
49.7
|
1.0
|
CB
|
E:GLN191
|
4.5
|
48.8
|
1.0
|
CB
|
D:ASN196
|
4.5
|
53.5
|
1.0
|
N
|
E:TYR192
|
4.6
|
50.6
|
1.0
|
CA
|
E:ASP190
|
4.6
|
42.9
|
1.0
|
CA
|
D:VAL197
|
4.7
|
48.0
|
1.0
|
CB
|
E:ASP190
|
4.7
|
42.7
|
1.0
|
CA
|
D:ASN196
|
4.7
|
53.5
|
1.0
|
CA
|
E:TYR192
|
4.9
|
52.3
|
1.0
|
|
Calcium binding site 2 out
of 3 in 1c3h
Go back to
Calcium Binding Sites List in 1c3h
Calcium binding site 2 out
of 3 in the ACRP30 Calcium Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of ACRP30 Calcium Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca8002
b:40.7
occ:1.00
|
OD1
|
E:ASP198
|
2.3
|
42.4
|
1.0
|
OD2
|
F:ASP198
|
2.4
|
43.9
|
1.0
|
O
|
F:GLN191
|
2.4
|
47.8
|
1.0
|
OD1
|
F:ASP190
|
2.4
|
44.0
|
1.0
|
O
|
E:VAL197
|
2.4
|
42.6
|
1.0
|
OD1
|
E:ASN196
|
2.6
|
47.5
|
1.0
|
CG
|
F:ASP198
|
3.4
|
43.1
|
1.0
|
CG
|
E:ASP198
|
3.4
|
44.1
|
1.0
|
C
|
F:GLN191
|
3.5
|
47.8
|
1.0
|
C
|
E:VAL197
|
3.5
|
43.4
|
1.0
|
CG
|
E:ASN196
|
3.5
|
48.2
|
1.0
|
CG
|
F:ASP190
|
3.6
|
44.6
|
1.0
|
N
|
F:GLN191
|
3.7
|
46.1
|
1.0
|
CA
|
E:ASP198
|
3.8
|
41.7
|
1.0
|
O
|
F:HOH1186
|
3.9
|
45.9
|
1.0
|
O
|
D:HOH1206
|
3.9
|
43.4
|
1.0
|
O
|
F:HOH1281
|
3.9
|
38.4
|
1.0
|
ND2
|
E:ASN196
|
3.9
|
49.7
|
1.0
|
N
|
E:ASP198
|
4.0
|
42.1
|
1.0
|
CB
|
F:ASP198
|
4.1
|
43.0
|
1.0
|
CA
|
F:GLN191
|
4.1
|
47.1
|
1.0
|
O
|
E:ASN196
|
4.2
|
46.3
|
1.0
|
C
|
F:ASP190
|
4.2
|
44.8
|
1.0
|
CB
|
E:ASP198
|
4.2
|
41.6
|
1.0
|
OD2
|
F:ASP190
|
4.2
|
44.8
|
1.0
|
C
|
E:ASN196
|
4.2
|
47.1
|
1.0
|
OD1
|
F:ASP198
|
4.3
|
42.5
|
1.0
|
OD2
|
E:ASP198
|
4.3
|
45.1
|
1.0
|
N
|
E:VAL197
|
4.5
|
45.5
|
1.0
|
CA
|
F:ASP190
|
4.5
|
43.7
|
1.0
|
CB
|
F:GLN191
|
4.5
|
47.4
|
1.0
|
N
|
F:TYR192
|
4.6
|
48.3
|
1.0
|
CB
|
F:ASP190
|
4.6
|
44.2
|
1.0
|
CA
|
E:VAL197
|
4.7
|
44.9
|
1.0
|
CB
|
E:ASN196
|
4.7
|
48.3
|
1.0
|
CA
|
E:ASN196
|
4.8
|
48.7
|
1.0
|
O
|
F:ASP190
|
4.8
|
45.4
|
1.0
|
CA
|
F:TYR192
|
4.9
|
49.0
|
1.0
|
C
|
E:ASP198
|
5.0
|
40.3
|
1.0
|
|
Calcium binding site 3 out
of 3 in 1c3h
Go back to
Calcium Binding Sites List in 1c3h
Calcium binding site 3 out
of 3 in the ACRP30 Calcium Complex
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of ACRP30 Calcium Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca8001
b:45.6
occ:1.00
|
OD1
|
F:ASP198
|
2.2
|
42.5
|
1.0
|
O
|
D:GLN191
|
2.4
|
50.4
|
1.0
|
OD2
|
D:ASP198
|
2.4
|
47.1
|
1.0
|
OD2
|
D:ASP190
|
2.4
|
43.0
|
1.0
|
O
|
F:VAL197
|
2.5
|
44.4
|
1.0
|
OD1
|
F:ASN196
|
2.7
|
44.1
|
1.0
|
CG
|
F:ASP198
|
3.4
|
43.1
|
1.0
|
CG
|
D:ASP198
|
3.4
|
43.9
|
1.0
|
CG
|
F:ASN196
|
3.4
|
44.9
|
1.0
|
C
|
F:VAL197
|
3.4
|
44.5
|
1.0
|
C
|
D:GLN191
|
3.5
|
50.2
|
1.0
|
CG
|
D:ASP190
|
3.6
|
43.2
|
1.0
|
ND2
|
F:ASN196
|
3.6
|
46.6
|
1.0
|
CA
|
F:ASP198
|
3.6
|
43.3
|
1.0
|
N
|
D:GLN191
|
3.7
|
46.0
|
1.0
|
O
|
D:HOH1048
|
3.8
|
34.8
|
1.0
|
O
|
D:HOH1001
|
3.9
|
43.2
|
1.0
|
N
|
F:ASP198
|
3.9
|
44.0
|
1.0
|
CB
|
F:ASP198
|
4.0
|
43.0
|
1.0
|
CA
|
D:GLN191
|
4.1
|
48.8
|
1.0
|
CB
|
D:ASP198
|
4.1
|
43.5
|
1.0
|
OD1
|
D:ASP198
|
4.2
|
43.2
|
1.0
|
O
|
D:HOH1206
|
4.2
|
43.4
|
1.0
|
C
|
F:ASN196
|
4.3
|
45.3
|
1.0
|
OD1
|
D:ASP190
|
4.3
|
42.3
|
1.0
|
O
|
F:ASN196
|
4.3
|
44.3
|
1.0
|
OD2
|
F:ASP198
|
4.4
|
43.9
|
1.0
|
C
|
D:ASP190
|
4.4
|
44.2
|
1.0
|
N
|
F:VAL197
|
4.4
|
45.0
|
1.0
|
CB
|
D:GLN191
|
4.5
|
49.0
|
1.0
|
CA
|
F:VAL197
|
4.6
|
45.5
|
1.0
|
N
|
D:TYR192
|
4.6
|
52.0
|
1.0
|
CB
|
F:ASN196
|
4.6
|
45.5
|
1.0
|
CA
|
D:ASP190
|
4.7
|
43.0
|
1.0
|
CA
|
F:ASN196
|
4.7
|
46.3
|
1.0
|
CB
|
D:ASP190
|
4.8
|
42.8
|
1.0
|
C
|
F:ASP198
|
4.9
|
42.9
|
1.0
|
ND2
|
D:ASN196
|
4.9
|
55.6
|
1.0
|
CA
|
D:TYR192
|
4.9
|
54.2
|
1.0
|
|
Reference:
T.Boggon,
P.Scherer,
L.Shapiro.
ACRP30 Calcium Complex To Be Published.
Page generated: Thu Jul 11 06:49:34 2024
|