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Calcium in PDB 1c3l: Subtilisin-Carlsberg Complexed with Xenon (8 Bar)

Enzymatic activity of Subtilisin-Carlsberg Complexed with Xenon (8 Bar)

All present enzymatic activity of Subtilisin-Carlsberg Complexed with Xenon (8 Bar):
3.4.21.62;

Protein crystallography data

The structure of Subtilisin-Carlsberg Complexed with Xenon (8 Bar), PDB code: 1c3l was solved by T.Prange, M.Schiltz, L.Pernot, N.Colloc'h, S.Longhi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 2.16
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 76.500, 55.300, 53.400, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 19.8

Other elements in 1c3l:

The structure of Subtilisin-Carlsberg Complexed with Xenon (8 Bar) also contains other interesting chemical elements:

Xenon (Xe) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Subtilisin-Carlsberg Complexed with Xenon (8 Bar) (pdb code 1c3l). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Subtilisin-Carlsberg Complexed with Xenon (8 Bar), PDB code: 1c3l:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1c3l

Go back to Calcium Binding Sites List in 1c3l
Calcium binding site 1 out of 2 in the Subtilisin-Carlsberg Complexed with Xenon (8 Bar)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Subtilisin-Carlsberg Complexed with Xenon (8 Bar) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca282

b:13.8
occ:1.00
OD1 A:ASN77 2.2 13.6 1.0
O A:LEU75 2.3 10.5 1.0
NE2 A:GLN2 2.3 1.4 1.0
O A:VAL81 2.3 16.2 1.0
O A:THR79 2.3 18.6 1.0
OD1 A:ASP41 2.5 10.9 1.0
OD2 A:ASP41 2.5 3.9 1.0
CG A:ASP41 2.9 14.7 1.0
CG A:ASN77 3.2 10.1 1.0
CD A:GLN2 3.5 22.0 1.0
C A:LEU75 3.5 13.7 1.0
C A:VAL81 3.5 18.9 1.0
C A:THR79 3.5 12.7 1.0
ND2 A:ASN77 3.7 18.3 1.0
N A:VAL81 3.7 6.3 1.0
N A:ASN77 3.9 15.0 1.0
CG A:GLN2 4.0 15.8 1.0
C A:GLY80 4.1 10.3 1.0
CA A:VAL81 4.2 8.4 1.0
CA A:LEU75 4.3 9.9 1.0
N A:THR79 4.3 10.3 1.0
N A:GLY80 4.4 20.4 1.0
N A:LEU75 4.4 15.3 1.0
CA A:GLY80 4.4 16.2 1.0
CB A:ASP41 4.4 10.2 1.0
OE1 A:GLN2 4.5 23.6 1.0
N A:ASP76 4.5 16.3 1.0
CB A:ASN77 4.5 9.2 1.0
N A:LEU82 4.5 19.0 1.0
CA A:THR79 4.5 9.2 1.0
CA A:ASP76 4.6 20.2 1.0
CA A:ASN77 4.6 11.3 1.0
CB A:LEU75 4.6 17.0 1.0
CG2 A:THR79 4.7 19.9 1.0
C A:ASP76 4.7 17.4 1.0
C A:ASN77 4.7 20.4 1.0
O A:ASN77 4.8 33.3 1.0
CA A:LEU82 4.8 12.6 1.0
O A:GLY80 4.8 16.9 1.0
C A:ALA74 4.8 11.7 1.0
CB A:GLN2 4.8 18.5 1.0
CB A:ALA74 4.9 6.6 1.0

Calcium binding site 2 out of 2 in 1c3l

Go back to Calcium Binding Sites List in 1c3l
Calcium binding site 2 out of 2 in the Subtilisin-Carlsberg Complexed with Xenon (8 Bar)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Subtilisin-Carlsberg Complexed with Xenon (8 Bar) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca284

b:39.4
occ:1.00
O A:TYR171 2.3 17.8 1.0
O A:VAL174 2.3 9.4 1.0
O A:ALA169 2.4 13.4 1.0
O A:HOH327 2.8 15.7 1.0
O A:HOH397 2.9 49.4 1.0
C A:TYR171 3.3 14.8 1.0
C A:VAL174 3.4 8.3 1.0
C A:ALA169 3.6 24.1 1.0
C A:LYS170 3.8 14.2 1.0
N A:TYR171 3.9 12.0 1.0
O A:LYS170 3.9 10.8 1.0
CA A:ASP172 4.0 19.7 1.0
CA A:VAL174 4.0 10.1 1.0
N A:VAL174 4.0 10.9 1.0
CB A:VAL174 4.0 7.1 1.0
N A:ASP172 4.0 13.1 1.0
N A:ALA176 4.1 10.1 1.0
CA A:TYR171 4.2 14.2 1.0
NH2 A:ARG247 4.3 26.0 1.0
CA A:LYS170 4.3 19.4 1.0
CB A:ALA176 4.3 15.1 1.0
C A:ASP172 4.3 11.3 1.0
N A:LYS170 4.4 19.4 1.0
N A:ILE175 4.5 8.3 1.0
CA A:ALA169 4.5 21.1 1.0
C A:ILE175 4.6 15.1 1.0
OE1 A:GLU197 4.6 16.6 1.0
CG1 A:VAL174 4.6 14.6 1.0
O A:GLU195 4.6 21.6 1.0
CA A:ILE175 4.7 9.2 1.0
O A:ASP172 4.7 10.4 1.0
CA A:ALA176 4.7 10.1 1.0
CB A:GLU195 4.8 11.7 1.0
N A:SER173 4.8 9.7 1.0

Reference:

T.Prange, M.Schiltz, L.Pernot, N.Colloc'h, S.Longhi, W.Bourguet, R.Fourme. Exploring Hydrophobic Sites in Proteins with Xenon or Krypton. Proteins V. 30 61 1998.
ISSN: ISSN 0887-3585
PubMed: 9443341
DOI: 10.1002/(SICI)1097-0134(19980101)30:1<61::AID-PROT6>3.3.CO;2-O
Page generated: Sat Dec 12 02:50:45 2020

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