Atomistry » Calcium » PDB 1c74-1cjy » 1cdg
Atomistry »
  Calcium »
    PDB 1c74-1cjy »
      1cdg »

Calcium in PDB 1cdg: Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form

Enzymatic activity of Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form

All present enzymatic activity of Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form:
2.4.1.19;

Protein crystallography data

The structure of Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form, PDB code: 1cdg was solved by C.L.Lawson, R.Van Montfort, B.V.Strokopytov, K.H.Kalk, H.J.Rozeboom, B.W.Dijkstra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 120.363, 110.935, 66.429, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Calcium Binding Sites:

The binding sites of Calcium atom in the Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form (pdb code 1cdg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form, PDB code: 1cdg:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1cdg

Go back to Calcium Binding Sites List in 1cdg
Calcium binding site 1 out of 2 in the Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca691

b:26.1
occ:1.00
OD1 A:ASN33 2.1 35.3 1.0
O A:HOH720 2.3 19.3 1.0
O A:ASN29 2.5 33.0 1.0
OD1 A:ASN32 2.5 27.1 1.0
OD2 A:ASP53 2.5 24.4 1.0
OD1 A:ASP27 2.5 26.5 1.0
O A:GLY51 2.6 28.7 1.0
CG A:ASN33 3.3 34.4 1.0
C A:ASN29 3.3 31.0 1.0
CG A:ASP27 3.4 26.9 1.0
CG A:ASP53 3.6 25.4 1.0
CG A:ASN32 3.7 28.1 1.0
C A:GLY51 3.7 28.9 1.0
CB A:ASP53 4.0 23.7 1.0
N A:PRO30 4.0 32.5 1.0
N A:ASN33 4.1 31.6 1.0
OD2 A:ASP27 4.1 25.1 1.0
ND2 A:ASN33 4.1 35.2 1.0
CA A:PRO30 4.1 33.9 1.0
CA A:GLY51 4.1 28.2 1.0
N A:ASN29 4.2 27.8 1.0
CA A:ASN33 4.3 31.9 1.0
CA A:ASN29 4.3 28.3 1.0
ND2 A:ASN32 4.4 27.1 1.0
C A:ASN32 4.4 32.8 1.0
O A:ALA111 4.4 27.5 1.0
CB A:ASP27 4.4 26.8 1.0
CB A:ASN33 4.4 32.4 1.0
CA A:ASP27 4.6 26.9 1.0
C A:PRO30 4.6 33.6 1.0
OD1 A:ASP53 4.6 24.3 1.0
N A:ASN32 4.6 34.9 1.0
C A:GLY52 4.7 22.0 1.0
CB A:ASN32 4.8 28.3 1.0
CB A:ASN29 4.8 29.1 1.0
CA A:ASN32 4.8 31.3 1.0
O A:ASN32 4.8 34.8 1.0
N A:GLY52 4.8 28.4 1.0
N A:ASP53 4.9 22.4 1.0
O A:GLY52 4.9 20.9 1.0
C A:ASP27 4.9 27.7 1.0
O A:PRO30 4.9 32.5 1.0
N A:GLY28 4.9 26.9 1.0
O A:HOH759 4.9 25.5 1.0

Calcium binding site 2 out of 2 in 1cdg

Go back to Calcium Binding Sites List in 1cdg
Calcium binding site 2 out of 2 in the Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca692

b:21.4
occ:1.00
OD1 A:ASN139 2.3 17.4 1.0
O A:HOH716 2.3 17.8 1.0
O A:HIS233 2.3 20.4 1.0
O A:HOH729 2.4 21.1 1.0
OD1 A:ASP199 2.5 21.6 1.0
OD2 A:ASP199 2.5 15.8 1.0
O A:ILE190 2.6 18.0 1.0
O A:HOH724 2.6 20.4 1.0
CG A:ASP199 2.8 18.6 1.0
CG A:ASN139 3.4 18.5 1.0
C A:HIS233 3.6 21.2 1.0
C A:ILE190 3.7 16.8 1.0
ND2 A:ASN139 4.0 19.6 1.0
O A:ASN139 4.2 21.8 1.0
CB A:ASP199 4.3 19.8 1.0
CA A:ILE190 4.4 16.0 1.0
CB A:HIS233 4.4 18.9 1.0
N A:MET234 4.4 19.8 1.0
O A:LYS192 4.5 23.3 1.0
CA A:MET234 4.5 16.9 1.0
CA A:HIS233 4.5 19.8 1.0
O A:GLY189 4.5 17.3 1.0
CG A:MET234 4.6 16.2 1.0
CB A:ASN139 4.7 17.7 1.0
N A:TYR191 4.8 18.1 1.0
ND1 A:HIS176 4.8 17.7 1.0
O A:LEU200 4.8 26.2 1.0
CG2 A:ILE190 4.9 14.7 1.0
O A:HOH825 4.9 33.8 1.0
O A:HOH704 4.9 15.3 1.0

Reference:

C.L.Lawson, R.Van Montfort, B.Strokopytov, H.J.Rozeboom, K.H.Kalk, G.E.De Vries, D.Penninga, L.Dijkhuizen, B.W.Dijkstra. Nucleotide Sequence and X-Ray Structure of Cyclodextrin Glycosyltransferase From Bacillus Circulans Strain 251 in A Maltose-Dependent Crystal Form. J.Mol.Biol. V. 236 590 1994.
ISSN: ISSN 0022-2836
PubMed: 8107143
DOI: 10.1006/JMBI.1994.1168
Page generated: Thu Jul 11 06:54:27 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy