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Calcium in PDB 1cvw: Crystal Structure of Active Site-Inhibited Human Coagulation Factor Viia (Des-Gla)

Enzymatic activity of Crystal Structure of Active Site-Inhibited Human Coagulation Factor Viia (Des-Gla)

All present enzymatic activity of Crystal Structure of Active Site-Inhibited Human Coagulation Factor Viia (Des-Gla):
3.4.21.21;

Protein crystallography data

The structure of Crystal Structure of Active Site-Inhibited Human Coagulation Factor Viia (Des-Gla), PDB code: 1cvw was solved by G.Kemball-Cook, D.J.D.Johnson, E.G.D.Tuddenham, K.Harlos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.28
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 94.850, 94.850, 114.300, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 23.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Active Site-Inhibited Human Coagulation Factor Viia (Des-Gla) (pdb code 1cvw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Active Site-Inhibited Human Coagulation Factor Viia (Des-Gla), PDB code: 1cvw:

Calcium binding site 1 out of 1 in 1cvw

Go back to Calcium Binding Sites List in 1cvw
Calcium binding site 1 out of 1 in the Crystal Structure of Active Site-Inhibited Human Coagulation Factor Viia (Des-Gla)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Active Site-Inhibited Human Coagulation Factor Viia (Des-Gla) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca302

b:23.3
occ:1.00
O H:GLU75 2.2 31.3 1.0
OE1 H:GLU80 2.4 22.3 1.0
OE1 H:GLU70 2.4 21.5 1.0
O H:HOH441 2.4 25.1 1.0
O H:ASP72 2.4 19.6 1.0
O H:HOH440 2.5 22.8 1.0
CD H:GLU70 3.3 23.1 1.0
C H:GLU75 3.4 30.2 1.0
CD H:GLU80 3.4 22.9 1.0
C H:ASP72 3.5 22.1 1.0
OE2 H:GLU70 3.5 21.7 1.0
CG H:GLU80 3.8 21.8 1.0
N H:ASP72 4.0 21.5 1.0
O H:HOH439 4.1 17.2 1.0
CA H:HIS76 4.1 30.7 1.0
N H:HIS76 4.2 29.9 1.0
CA H:ASP72 4.2 22.1 1.0
N H:GLU75 4.4 31.1 1.0
O H:HOH536 4.4 54.9 1.0
CA H:GLU75 4.4 32.3 1.0
N H:LEU73 4.4 23.6 1.0
N H:HIS71 4.5 21.6 1.0
O H:HOH468 4.5 29.0 1.0
OE2 H:GLU80 4.5 22.0 1.0
CB H:ASP72 4.6 24.5 1.0
N H:ASP77 4.6 29.9 1.0
CA H:LEU73 4.6 23.9 1.0
CG H:GLU70 4.7 23.0 1.0
O H:HOH470 4.8 26.6 1.0
C H:HIS76 4.9 31.0 1.0
C H:HIS71 4.9 22.3 1.0
C H:LEU73 5.0 24.9 1.0

Reference:

G.Kemball-Cook, D.J.Johnson, E.G.Tuddenham, K.Harlos. Crystal Structure of Active Site-Inhibited Human Coagulation Factor Viia (Des-Gla). J.Struct.Biol. V. 127 213 1999.
ISSN: ISSN 1047-8477
PubMed: 10544046
DOI: 10.1006/JSBI.1999.4158
Page generated: Sat Dec 12 02:52:07 2020

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