Calcium in PDB 1d2j: Ldl Receptor Ligand-Binding Module 6

The binding sites of Calcium atom in the Ldl Receptor Ligand-Binding Module 6 (pdb code 1d2j). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Ldl Receptor Ligand-Binding Module 6, PDB code: 1d2j:

Calcium binding site 1 out of 1 in the Ldl Receptor Ligand-Binding Module 6


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Ldl Receptor Ligand-Binding Module 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1 b:0.0 occ:1.00 OE2 A:GLU246 2.4 0.0 1.0 OD2 A:ASP239 2.4 0.0 1.0 OE1 A:GLU246 2.4 0.0 1.0 OD2 A:ASP235 2.5 0.0 1.0 O A:ARG232 2.5 0.0 1.0 OD2 A:ASP245 2.6 0.0 1.0 O A:GLU237 2.6 0.0 1.0 CD A:GLU246 2.7 0.0 1.0 HB2 A:ASP239 2.8 0.0 1.0 HB3 A:ARG232 3.1 0.0 1.0 H A:ASP239 3.1 0.0 1.0 CG A:ASP239 3.3 0.0 1.0 HB3 A:GLU237 3.4 0.0 1.0 HG2 A:ARG232 3.4 0.0 1.0 CB A:ASP239 3.5 0.0 1.0 C A:GLU237 3.5 0.0 1.0 HB2 A:GLU237 3.5 0.0 1.0 CG A:ASP235 3.6 0.0 1.0 H A:ASP235 3.6 0.0 1.0 HD3 A:ARG232 3.6 0.0 1.0 HB3 A:ASP235 3.6 0.0 1.0 C A:ARG232 3.7 0.0 1.0 N A:ASP239 3.7 0.0 1.0 H A:GLU237 3.7 0.0 1.0 CG A:ASP245 3.7 0.0 1.0 CB A:GLU237 3.8 0.0 1.0 CB A:ARG232 3.9 0.0 1.0 CG A:ARG232 4.0 0.0 1.0 HB3 A:GLU246 4.0 0.0 1.0 CB A:ASP235 4.1 0.0 1.0 CA A:GLU237 4.1 0.0 1.0 CG A:GLU246 4.1 0.0 1.0 CA A:ASP239 4.2 0.0 1.0 N A:GLU237 4.2 0.0 1.0 OD1 A:ASP245 4.3 0.0 1.0 N A:ASP235 4.3 0.0 1.0 CD A:ARG232 4.3 0.0 1.0 CA A:ARG232 4.3 0.0 1.0 HB3 A:ASP239 4.4 0.0 1.0 OD1 A:ASP239 4.4 0.0 1.0 N A:TYR238 4.5 0.0 1.0 HA A:ASP239 4.5 0.0 1.0 HG2 A:GLU246 4.5 0.0 1.0 HA A:GLN233 4.5 0.0 1.0 C A:TYR238 4.5 0.0 1.0 CB A:GLU246 4.6 0.0 1.0 HA A:TYR238 4.6 0.0 1.0 OD1 A:ASP235 4.6 0.0 1.0 CA A:ASP235 4.7 0.0 1.0 N A:GLN233 4.7 0.0 1.0 HA A:ARG232 4.7 0.0 1.0 HB2 A:ARG232 4.8 0.0 1.0 HG3 A:GLU246 4.8 0.0 1.0 H A:CYS234 4.8 0.0 1.0 CA A:TYR238 4.8 0.0 1.0 N A:CYS234 4.8 0.0 1.0 HB2 A:ASP245 4.8 0.0 1.0 C A:ASP235 4.9 0.0 1.0 C A:GLN233 4.9 0.0 1.0 HD2 A:ARG232 4.9 0.0 1.0 CA A:GLN233 4.9 0.0 1.0 HD11 A:ILE228 4.9 0.0 1.0 CB A:ASP245 5.0 0.0 1.0

C.L.North, S.C.Blacklow. Solution Structure of the Sixth Ldl-A Module of the Ldl Receptor. Biochemistry V. 39 2564 2000.
ISSN: ISSN 0006-2960
PubMed: 10704205
DOI: 10.1021/BI992087A