Calcium in PDB 1daq: Solution Structure of the Type I Dockerin Domain From the Clostridium Thermocellum Cellulosome (Minimized Average Structure)

All present enzymatic activity of Solution Structure of the Type I Dockerin Domain From the Clostridium Thermocellum Cellulosome (Minimized Average Structure):
3.2.1.4;

The binding sites of Calcium atom in the Solution Structure of the Type I Dockerin Domain From the Clostridium Thermocellum Cellulosome (Minimized Average Structure) (pdb code 1daq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of the Type I Dockerin Domain From the Clostridium Thermocellum Cellulosome (Minimized Average Structure), PDB code: 1daq:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of the Type I Dockerin Domain From the Clostridium Thermocellum Cellulosome (Minimized Average Structure)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of the Type I Dockerin Domain From the Clostridium Thermocellum Cellulosome (Minimized Average Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca72 b:0.0 occ:1.00 HB3 A:ASP12 2.1 0.0 1.0 H A:LYS14 2.6 0.0 1.0 O A:LYS14 2.7 0.0 1.0 OD1 A:ASP19 2.8 0.0 1.0 OD1 A:ASN10 2.8 0.0 1.0 H A:GLY13 2.8 0.0 1.0 OD2 A:ASP19 2.8 0.0 1.0 OD2 A:ASP12 2.8 0.0 1.0 OD1 A:ASP8 3.0 0.0 1.0 CB A:ASP12 3.1 0.0 1.0 CG A:ASP19 3.1 0.0 1.0 H A:ASP12 3.3 0.0 1.0 CG A:ASP12 3.4 0.0 1.0 N A:GLY13 3.5 0.0 1.0 HD22 A:ASN16 3.5 0.0 1.0 N A:LYS14 3.6 0.0 1.0 H A:ASN10 3.7 0.0 1.0 H A:VAL9 3.7 0.0 1.0 HB2 A:ASP12 3.8 0.0 1.0 C A:LYS14 3.8 0.0 1.0 HD22 A:ASN10 3.8 0.0 1.0 CG A:ASN10 3.9 0.0 1.0 CA A:ASP12 4.0 0.0 1.0 N A:ASP12 4.0 0.0 1.0 C A:ASP12 4.1 0.0 1.0 CG A:ASP8 4.2 0.0 1.0 ND2 A:ASN16 4.2 0.0 1.0 HD21 A:ASN16 4.2 0.0 1.0 HB A:VAL9 4.2 0.0 1.0 HG22 A:THR18 4.3 0.0 1.0 ND2 A:ASN10 4.3 0.0 1.0 HB A:THR18 4.3 0.0 1.0 CA A:LYS14 4.3 0.0 1.0 CA A:GLY13 4.4 0.0 1.0 HA3 A:GLY13 4.4 0.0 1.0 HA A:VAL15 4.5 0.0 1.0 C A:GLY13 4.5 0.0 1.0 HG2 A:LYS14 4.5 0.0 1.0 OD1 A:ASP12 4.6 0.0 1.0 CB A:ASP19 4.7 0.0 1.0 N A:ASN10 4.7 0.0 1.0 HA A:ASP8 4.7 0.0 1.0 N A:VAL9 4.7 0.0 1.0 OD2 A:ASP8 4.7 0.0 1.0 H A:ASN16 4.7 0.0 1.0 HA A:LYS14 4.9 0.0 1.0 N A:VAL15 4.9 0.0 1.0 HA A:ASP12 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Solution Structure of the Type I Dockerin Domain From the Clostridium Thermocellum Cellulosome (Minimized Average Structure)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of the Type I Dockerin Domain From the Clostridium Thermocellum Cellulosome (Minimized Average Structure) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca73 b:0.0 occ:1.00 OD2 A:ASP51 2.1 0.0 1.0 H A:LEU41 2.2 0.0 1.0 CG A:ASP51 2.5 0.0 1.0 OD1 A:ASN42 2.6 0.0 1.0 HA A:ASP40 2.7 0.0 1.0 OD2 A:ASP44 2.8 0.0 1.0 OD1 A:ASP51 2.8 0.0 1.0 O A:ARG46 2.9 0.0 1.0 OD1 A:ASP40 3.1 0.0 1.0 HD11 A:LEU41 3.1 0.0 1.0 N A:LEU41 3.2 0.0 1.0 H A:ASN42 3.2 0.0 1.0 HB2 A:ASP44 3.3 0.0 1.0 HB2 A:ASP51 3.5 0.0 1.0 CG A:ASN42 3.5 0.0 1.0 CB A:ASP51 3.5 0.0 1.0 CA A:ASP40 3.6 0.0 1.0 CG A:ASP44 3.6 0.0 1.0 N A:ASN42 3.7 0.0 1.0 HB2 A:ASN42 3.8 0.0 1.0 H A:ASP44 3.8 0.0 1.0 C A:ARG46 3.8 0.0 1.0 H A:GLY45 3.9 0.0 1.0 C A:ASP40 3.9 0.0 1.0 HB3 A:ASP51 3.9 0.0 1.0 CB A:ASP44 3.9 0.0 1.0 CG A:ASP40 4.0 0.0 1.0 HA A:VAL47 4.1 0.0 1.0 CB A:ASP40 4.1 0.0 1.0 CB A:ASN42 4.1 0.0 1.0 HB2 A:ASP40 4.1 0.0 1.0 CD1 A:LEU41 4.1 0.0 1.0 O A:ALA39 4.2 0.0 1.0 CA A:LEU41 4.2 0.0 1.0 C A:LEU41 4.3 0.0 1.0 HB2 A:LEU41 4.3 0.0 1.0 HD13 A:LEU41 4.4 0.0 1.0 H A:ARG46 4.4 0.0 1.0 HG13 A:VAL47 4.4 0.0 1.0 CA A:ASN42 4.4 0.0 1.0 N A:ARG46 4.4 0.0 1.0 HA A:ARG46 4.5 0.0 1.0 CA A:ARG46 4.5 0.0 1.0 ND2 A:ASN42 4.6 0.0 1.0 OD1 A:ASP44 4.6 0.0 1.0 N A:ASP44 4.6 0.0 1.0 N A:GLY45 4.6 0.0 1.0 H A:ASP51 4.7 0.0 1.0 HD12 A:LEU41 4.7 0.0 1.0 N A:ASP40 4.7 0.0 1.0 HD22 A:ASN42 4.7 0.0 1.0 CB A:LEU41 4.7 0.0 1.0 HB3 A:ASP44 4.7 0.0 1.0 N A:VAL47 4.8 0.0 1.0 CA A:ASP44 4.8 0.0 1.0 H A:GLU43 4.8 0.0 1.0 C A:ALA39 4.9 0.0 1.0 CA A:ASP51 4.9 0.0 1.0 C A:ASN42 4.9 0.0 1.0 H A:ASN48 4.9 0.0 1.0 C A:GLY45 4.9 0.0 1.0 CA A:VAL47 5.0 0.0 1.0

B.L.Lytle, B.F.Volkman, W.M.Westler, M.P.Heckman, J.H.Wu. Solution Structure of A Type I Dockerin Domain, A Novel Prokaryotic, Extracellular Calcium-Binding Domain. J.Mol.Biol. V. 307 745 2001.
ISSN: ISSN 0022-2836
PubMed: 11273698
DOI: 10.1006/JMBI.2001.4522