Calcium in PDB 1ee6: Crystal Structure of Pectate Lyase From Bacillus Sp. Strain Ksm-P15.

All present enzymatic activity of Crystal Structure of Pectate Lyase From Bacillus Sp. Strain Ksm-P15.:
4.2.2.2;

The structure of Crystal Structure of Pectate Lyase From Bacillus Sp. Strain Ksm-P15., PDB code: 1ee6 was solved by M.Akita, A.Suzuki, T.Kobayashi, S.Ito, T.Yamane, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.900, 60.500, 83.000, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 23.4

The binding sites of Calcium atom in the Crystal Structure of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. (pdb code 1ee6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Pectate Lyase From Bacillus Sp. Strain Ksm-P15., PDB code: 1ee6:

Calcium binding site 1 out of 1 in the Crystal Structure of Pectate Lyase From Bacillus Sp. Strain Ksm-P15.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca300 b:18.5 occ:1.00 O A:VAL81 2.2 7.9 1.0 O A:HOH467 2.2 24.5 1.0 OD2 A:ASP80 2.2 7.7 1.0 O A:LYS103 2.3 7.7 1.0 O A:HOH327 2.5 3.5 1.0 O A:HOH359 3.0 16.4 1.0 CG A:ASP80 3.4 3.8 1.0 C A:VAL81 3.4 4.2 1.0 C A:LYS103 3.6 6.4 1.0 N A:VAL81 4.0 6.6 1.0 OD1 A:ASP80 4.1 6.8 1.0 C A:ASP80 4.2 6.7 1.0 CA A:VAL81 4.3 2.9 1.0 O A:GLY34 4.3 6.0 1.0 CB A:LYS103 4.4 4.6 1.0 O A:HOH453 4.4 32.3 1.0 O A:HOH335 4.4 18.4 1.0 CA A:ALA104 4.4 3.0 1.0 N A:TYR105 4.4 4.6 1.0 N A:GLY82 4.4 2.8 1.0 N A:ALA104 4.4 5.8 1.0 O A:GLY82 4.4 5.3 1.0 CB A:ASP80 4.5 4.5 1.0 O A:HOH319 4.6 2.8 1.0 CA A:GLY82 4.6 2.8 1.0 O A:ASP80 4.6 7.1 1.0 CA A:ASP80 4.6 3.7 1.0 O A:HOH422 4.6 16.3 1.0 CA A:LYS103 4.7 7.6 1.0 O A:HOH325 4.8 17.6 1.0 CB A:VAL81 4.8 3.2 1.0 C A:ALA104 4.9 3.0 1.0 C A:GLY82 4.9 2.3 1.0

M.Akita, A.Suzuki, T.Kobayashi, S.Ito, T.Yamane. The First Structure of Pectate Lyase Belonging to Polysaccharide Lyase Family 3. Acta Crystallogr.,Sect.D V. 57 1786 2001.
ISSN: ISSN 0907-4449
PubMed: 11717490
DOI: 10.1107/S0907444900003334