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Calcium in PDB 1egg: Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor

Protein crystallography data

The structure of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor, PDB code: 1egg was solved by H.Feinberg, S.Park-Snyder, A.R.Kolatkar, C.T.Heise, M.E.Taylor, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 500.00 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 129.890, 38.280, 54.810, 90.00, 99.09, 90.00
R / Rfree (%) 21.6 / 27.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor (pdb code 1egg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor, PDB code: 1egg:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 1egg

Go back to Calcium Binding Sites List in 1egg
Calcium binding site 1 out of 3 in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:15.2
occ:1.00
O A:ASP748 2.4 12.0 1.0
OD1 A:ASP748 2.4 14.2 1.0
OD1 A:ASN747 2.4 19.3 1.0
O A:HOH10 2.6 35.4 1.0
N A:ASP748 3.3 13.8 1.0
C A:ASP748 3.4 13.7 1.0
CG A:ASP748 3.4 16.0 1.0
CG A:ASN747 3.5 17.1 1.0
CA A:ASP748 3.8 13.8 1.0
ND2 A:ASN747 4.2 18.0 1.0
CB A:ASP748 4.2 14.3 1.0
OD2 A:ASP748 4.3 18.1 1.0
O A:HOH7 4.3 24.1 1.0
C A:ASN747 4.3 14.8 1.0
CB A:ASN747 4.6 15.8 1.0
CA A:ASN747 4.6 15.4 1.0
N A:ILE749 4.6 14.1 1.0
CA A:CA203 4.7 27.9 1.0
CG2 A:ILE749 4.7 17.4 1.0

Calcium binding site 2 out of 3 in 1egg

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Calcium binding site 2 out of 3 in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca203

b:27.9
occ:1.00
O A:HOH7 2.4 24.1 1.0
O A:HOH10 3.7 35.4 1.0
OD1 A:ASN747 4.2 19.3 1.0
CA A:CA201 4.7 15.2 1.0
CG A:ASN747 5.0 17.1 1.0

Calcium binding site 3 out of 3 in 1egg

Go back to Calcium Binding Sites List in 1egg
Calcium binding site 3 out of 3 in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca202

b:14.7
occ:1.00
OD1 B:ASP748 2.3 12.6 1.0
O B:ASP748 2.4 16.7 1.0
OD1 B:ASN747 2.4 17.4 1.0
O B:HOH5 2.6 19.7 1.0
CG B:ASP748 3.4 14.2 1.0
C B:ASP748 3.5 15.9 1.0
N B:ASP748 3.5 13.5 1.0
O B:HOH67 3.6 70.4 1.0
CG B:ASN747 3.6 16.1 1.0
CA B:ASP748 3.9 14.6 1.0
OD2 B:ASP748 4.2 16.2 1.0
CB B:ASP748 4.2 14.5 1.0
C B:ASN747 4.4 13.0 1.0
ND2 B:ASN747 4.4 15.2 1.0
N B:ILE749 4.6 17.6 1.0
CA B:ASN747 4.7 12.0 1.0
CB B:ASN747 4.7 13.6 1.0
O B:HOH25 4.8 42.9 1.0

Reference:

H.Feinberg, S.Park-Snyder, A.R.Kolatkar, C.T.Heise, M.E.Taylor, W.I.Weis. Structure of A C-Type Carbohydrate Recognition Domain From the Macrophage Mannose Receptor. J.Biol.Chem. V. 275 21539 2000.
ISSN: ISSN 0021-9258
PubMed: 10779515
DOI: 10.1074/JBC.M002366200
Page generated: Sat Dec 12 02:54:10 2020

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