Calcium in PDB 1egg: Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor

The structure of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor, PDB code: 1egg was solved by H.Feinberg, S.Park-Snyder, A.R.Kolatkar, C.T.Heise, M.E.Taylor, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	500.00 / 2.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	129.890, 38.280, 54.810, 90.00, 99.09, 90.00
R / Rfree (%)	21.6 / 27.8

The binding sites of Calcium atom in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor (pdb code 1egg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor, PDB code: 1egg:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:15.2 occ:1.00 O A:ASP748 2.4 12.0 1.0 OD1 A:ASP748 2.4 14.2 1.0 OD1 A:ASN747 2.4 19.3 1.0 O A:HOH10 2.6 35.4 1.0 N A:ASP748 3.3 13.8 1.0 C A:ASP748 3.4 13.7 1.0 CG A:ASP748 3.4 16.0 1.0 CG A:ASN747 3.5 17.1 1.0 CA A:ASP748 3.8 13.8 1.0 ND2 A:ASN747 4.2 18.0 1.0 CB A:ASP748 4.2 14.3 1.0 OD2 A:ASP748 4.3 18.1 1.0 O A:HOH7 4.3 24.1 1.0 C A:ASN747 4.3 14.8 1.0 CB A:ASN747 4.6 15.8 1.0 CA A:ASN747 4.6 15.4 1.0 N A:ILE749 4.6 14.1 1.0 CA A:CA203 4.7 27.9 1.0 CG2 A:ILE749 4.7 17.4 1.0

Calcium binding site 2 out of 3 in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:27.9 occ:1.00 O A:HOH7 2.4 24.1 1.0 O A:HOH10 3.7 35.4 1.0 OD1 A:ASN747 4.2 19.3 1.0 CA A:CA201 4.7 15.2 1.0 CG A:ASN747 5.0 17.1 1.0

Calcium binding site 3 out of 3 in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca202 b:14.7 occ:1.00 OD1 B:ASP748 2.3 12.6 1.0 O B:ASP748 2.4 16.7 1.0 OD1 B:ASN747 2.4 17.4 1.0 O B:HOH5 2.6 19.7 1.0 CG B:ASP748 3.4 14.2 1.0 C B:ASP748 3.5 15.9 1.0 N B:ASP748 3.5 13.5 1.0 O B:HOH67 3.6 70.4 1.0 CG B:ASN747 3.6 16.1 1.0 CA B:ASP748 3.9 14.6 1.0 OD2 B:ASP748 4.2 16.2 1.0 CB B:ASP748 4.2 14.5 1.0 C B:ASN747 4.4 13.0 1.0 ND2 B:ASN747 4.4 15.2 1.0 N B:ILE749 4.6 17.6 1.0 CA B:ASN747 4.7 12.0 1.0 CB B:ASN747 4.7 13.6 1.0 O B:HOH25 4.8 42.9 1.0

H.Feinberg, S.Park-Snyder, A.R.Kolatkar, C.T.Heise, M.E.Taylor, W.I.Weis. Structure of A C-Type Carbohydrate Recognition Domain From the Macrophage Mannose Receptor. J.Biol.Chem. V. 275 21539 2000.
ISSN: ISSN 0021-9258
PubMed: 10779515
DOI: 10.1074/JBC.M002366200