Calcium in PDB 1egi: Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor

The structure of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor, PDB code: 1egi was solved by H.Feinberg, S.Park-Snyder, A.R.Kolatkar, C.T.Heise, M.E.Taylor, W.I.Weis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	500.00 / 2.30
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	130.056, 38.689, 55.025, 90.00, 98.57, 90.00
R / Rfree (%)	21.2 / 26.2

The binding sites of Calcium atom in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor (pdb code 1egi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor, PDB code: 1egi:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:23.1 occ:1.00 OD1 A:ASP748 2.4 19.7 1.0 O A:ASP748 2.5 19.6 1.0 O A:HOH3 2.6 25.1 1.0 OD1 A:ASN747 2.6 32.2 1.0 N A:ASP748 3.5 23.1 1.0 CG A:ASP748 3.5 22.4 1.0 C A:ASP748 3.5 22.0 1.0 CG A:ASN747 3.6 29.7 1.0 CA A:ASP748 3.9 22.3 1.0 O A:HOH2 4.1 34.1 1.0 CB A:ASP748 4.3 21.5 1.0 ND2 A:ASN747 4.3 32.6 1.0 OD2 A:ASP748 4.3 21.8 1.0 C A:ASN747 4.4 24.1 1.0 N A:ILE749 4.6 22.6 1.0 CA A:ASN747 4.7 25.2 1.0 CB A:ASN747 4.7 26.8 1.0 CG2 A:ILE749 4.7 27.0 1.0 CA A:CA803 4.8 38.6 1.0

Calcium binding site 2 out of 3 in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca803 b:38.6 occ:1.00 O A:HOH32 2.7 50.0 1.0 O A:HOH81 2.8 51.5 1.0 O A:HOH2 2.9 34.1 1.0 O A:HOH3 3.9 25.1 1.0 OD1 A:ASN747 4.3 32.2 1.0 CA A:CA801 4.8 23.1 1.0

Calcium binding site 3 out of 3 in the Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of A C-Type Carbohydrate-Recognition Domain (Crd- 4) From the Macrophage Mannose Receptor within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca802 b:23.5 occ:1.00 OD1 B:ASP748 2.2 19.2 1.0 OD1 B:ASN747 2.4 27.2 1.0 O B:ASP748 2.5 27.9 1.0 O B:HOH1 2.6 39.7 1.0 CG B:ASP748 3.4 21.2 1.0 N B:ASP748 3.5 21.5 1.0 C B:ASP748 3.5 26.4 1.0 CG B:ASN747 3.6 25.5 1.0 O B:HOH37 3.8 54.2 1.0 CA B:ASP748 3.9 23.8 1.0 CB B:ASP748 4.2 23.1 1.0 OD2 B:ASP748 4.3 21.7 1.0 ND2 B:ASN747 4.3 26.3 1.0 C B:ASN747 4.4 20.8 1.0 CB B:ASN747 4.7 23.0 1.0 CA B:ASN747 4.7 20.9 1.0 N B:ILE749 4.7 28.3 1.0

H.Feinberg, S.Park-Snyder, A.R.Kolatkar, C.T.Heise, M.E.Taylor, W.I.Weis. Structure of A C-Type Carbohydrate Recognition Domain From the Macrophage Mannose Receptor. J.Biol.Chem. V. 275 21539 2000.
ISSN: ISSN 0021-9258
PubMed: 10779515
DOI: 10.1074/JBC.M002366200