Calcium in PDB 1emo: uc(Nmr) Study of A Pair of Fibrillin CA2+ Binding Epidermal Growth Factor-Like Domains, 22 Structures
Calcium Binding Sites:
The binding sites of Calcium atom in the uc(Nmr) Study of A Pair of Fibrillin CA2+ Binding Epidermal Growth Factor-Like Domains, 22 Structures
(pdb code 1emo). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
uc(Nmr) Study of A Pair of Fibrillin CA2+ Binding Epidermal Growth Factor-Like Domains, 22 Structures, PDB code: 1emo:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 1emo
Go back to
Calcium Binding Sites List in 1emo
Calcium binding site 1 out
of 2 in the uc(Nmr) Study of A Pair of Fibrillin CA2+ Binding Epidermal Growth Factor-Like Domains, 22 Structures
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of uc(Nmr) Study of A Pair of Fibrillin CA2+ Binding Epidermal Growth Factor-Like Domains, 22 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2224
b:0.0
occ:1.00
|
HD22
|
A:ASN2144
|
2.2
|
0.0
|
1.0
|
OD2
|
A:ASP2127
|
2.5
|
0.0
|
1.0
|
OE2
|
A:GLU2130
|
2.6
|
0.0
|
1.0
|
OE1
|
A:GLU2130
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASN2144
|
2.6
|
0.0
|
1.0
|
ND2
|
A:ASN2144
|
2.6
|
0.0
|
1.0
|
O
|
A:THR2145
|
2.6
|
0.0
|
1.0
|
O
|
A:MET2128
|
2.7
|
0.0
|
1.0
|
CD
|
A:GLU2130
|
2.8
|
0.0
|
1.0
|
CG
|
A:ASN2144
|
2.9
|
0.0
|
1.0
|
HD21
|
A:ASN2144
|
3.4
|
0.0
|
1.0
|
HB3
|
A:ASP2127
|
3.6
|
0.0
|
1.0
|
CG
|
A:ASP2127
|
3.6
|
0.0
|
1.0
|
H
|
A:THR2145
|
3.7
|
0.0
|
1.0
|
O
|
A:SER2148
|
3.7
|
0.0
|
1.0
|
H
|
A:SER2148
|
3.7
|
0.0
|
1.0
|
C
|
A:THR2145
|
3.8
|
0.0
|
1.0
|
C
|
A:MET2128
|
3.9
|
0.0
|
1.0
|
N
|
A:THR2145
|
3.9
|
0.0
|
1.0
|
HA
|
A:ASN2144
|
3.9
|
0.0
|
1.0
|
HG3
|
A:GLU2130
|
4.0
|
0.0
|
1.0
|
HA
|
A:ASP2129
|
4.0
|
0.0
|
1.0
|
CG
|
A:GLU2130
|
4.0
|
0.0
|
1.0
|
O
|
A:ASP2129
|
4.1
|
0.0
|
1.0
|
CB
|
A:ASP2127
|
4.1
|
0.0
|
1.0
|
O
|
A:ASP2146
|
4.2
|
0.0
|
1.0
|
CB
|
A:ASN2144
|
4.2
|
0.0
|
1.0
|
C
|
A:ASN2144
|
4.2
|
0.0
|
1.0
|
CA
|
A:ASN2144
|
4.3
|
0.0
|
1.0
|
C
|
A:ASP2129
|
4.5
|
0.0
|
1.0
|
C
|
A:ASP2146
|
4.5
|
0.0
|
1.0
|
CA
|
A:THR2145
|
4.5
|
0.0
|
1.0
|
OD1
|
A:ASP2127
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP2129
|
4.6
|
0.0
|
1.0
|
N
|
A:SER2148
|
4.6
|
0.0
|
1.0
|
C
|
A:ASP2127
|
4.6
|
0.0
|
1.0
|
N
|
A:MET2128
|
4.6
|
0.0
|
1.0
|
HG2
|
A:GLU2130
|
4.6
|
0.0
|
1.0
|
HA
|
A:ASP2146
|
4.6
|
0.0
|
1.0
|
HB2
|
A:MET2128
|
4.7
|
0.0
|
1.0
|
N
|
A:ASP2129
|
4.7
|
0.0
|
1.0
|
HB3
|
A:ASN2144
|
4.7
|
0.0
|
1.0
|
O
|
A:ASP2127
|
4.7
|
0.0
|
1.0
|
C
|
A:SER2148
|
4.8
|
0.0
|
1.0
|
HB2
|
A:GLU2130
|
4.8
|
0.0
|
1.0
|
N
|
A:ASP2146
|
4.8
|
0.0
|
1.0
|
CA
|
A:MET2128
|
4.8
|
0.0
|
1.0
|
HA2
|
A:GLY2147
|
4.8
|
0.0
|
1.0
|
H
|
A:MET2128
|
4.8
|
0.0
|
1.0
|
HG1
|
A:THR2145
|
4.9
|
0.0
|
1.0
|
OG1
|
A:THR2145
|
4.9
|
0.0
|
1.0
|
CA
|
A:ASP2146
|
4.9
|
0.0
|
1.0
|
HB2
|
A:ASN2144
|
4.9
|
0.0
|
1.0
|
HB2
|
A:ASP2127
|
4.9
|
0.0
|
1.0
|
O
|
A:ASN2144
|
4.9
|
0.0
|
1.0
|
HB3
|
A:TYR2149
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 2 in 1emo
Go back to
Calcium Binding Sites List in 1emo
Calcium binding site 2 out
of 2 in the uc(Nmr) Study of A Pair of Fibrillin CA2+ Binding Epidermal Growth Factor-Like Domains, 22 Structures
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of uc(Nmr) Study of A Pair of Fibrillin CA2+ Binding Epidermal Growth Factor-Like Domains, 22 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2225
b:0.0
occ:1.00
|
OD2
|
A:ASP2166
|
2.4
|
0.0
|
1.0
|
OE1
|
A:GLU2169
|
2.5
|
0.0
|
1.0
|
O
|
A:THR2167
|
2.5
|
0.0
|
1.0
|
O
|
A:VAL2184
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASN2183
|
2.6
|
0.0
|
1.0
|
OE2
|
A:GLU2169
|
2.6
|
0.0
|
1.0
|
CD
|
A:GLU2169
|
2.7
|
0.0
|
1.0
|
O
|
A:GLY2187
|
2.7
|
0.0
|
1.0
|
H
|
A:GLU2169
|
2.9
|
0.0
|
1.0
|
H
|
A:VAL2184
|
3.1
|
0.0
|
1.0
|
HB3
|
A:ASP2166
|
3.1
|
0.0
|
1.0
|
HB2
|
A:GLU2169
|
3.3
|
0.0
|
1.0
|
CG
|
A:ASP2166
|
3.3
|
0.0
|
1.0
|
C
|
A:VAL2184
|
3.6
|
0.0
|
1.0
|
C
|
A:THR2167
|
3.6
|
0.0
|
1.0
|
H
|
A:GLY2187
|
3.6
|
0.0
|
1.0
|
HG21
|
A:THR2167
|
3.7
|
0.0
|
1.0
|
CG
|
A:ASN2183
|
3.7
|
0.0
|
1.0
|
H
|
A:THR2167
|
3.8
|
0.0
|
1.0
|
CB
|
A:ASP2166
|
3.8
|
0.0
|
1.0
|
N
|
A:GLU2169
|
3.8
|
0.0
|
1.0
|
N
|
A:VAL2184
|
3.8
|
0.0
|
1.0
|
C
|
A:GLY2187
|
3.8
|
0.0
|
1.0
|
CG
|
A:GLU2169
|
3.9
|
0.0
|
1.0
|
HD22
|
A:ASN2183
|
3.9
|
0.0
|
1.0
|
HA
|
A:ASP2168
|
3.9
|
0.0
|
1.0
|
N
|
A:THR2167
|
4.0
|
0.0
|
1.0
|
HA
|
A:ILE2185
|
4.0
|
0.0
|
1.0
|
CB
|
A:GLU2169
|
4.0
|
0.0
|
1.0
|
HG11
|
A:VAL2184
|
4.0
|
0.0
|
1.0
|
HA
|
A:PHE2188
|
4.1
|
0.0
|
1.0
|
HA
|
A:ASN2183
|
4.2
|
0.0
|
1.0
|
ND2
|
A:ASN2183
|
4.2
|
0.0
|
1.0
|
HB3
|
A:PHE2188
|
4.3
|
0.0
|
1.0
|
OD1
|
A:ASP2166
|
4.3
|
0.0
|
1.0
|
N
|
A:GLY2187
|
4.3
|
0.0
|
1.0
|
CA
|
A:VAL2184
|
4.4
|
0.0
|
1.0
|
C
|
A:ASP2166
|
4.4
|
0.0
|
1.0
|
HG2
|
A:GLU2169
|
4.4
|
0.0
|
1.0
|
CA
|
A:THR2167
|
4.4
|
0.0
|
1.0
|
N
|
A:ASP2168
|
4.5
|
0.0
|
1.0
|
HG22
|
A:THR2167
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP2168
|
4.5
|
0.0
|
1.0
|
N
|
A:ILE2185
|
4.5
|
0.0
|
1.0
|
CG2
|
A:THR2167
|
4.5
|
0.0
|
1.0
|
CA
|
A:GLU2169
|
4.6
|
0.0
|
1.0
|
CA
|
A:GLY2187
|
4.6
|
0.0
|
1.0
|
O
|
A:GLY2156
|
4.6
|
0.0
|
1.0
|
HB2
|
A:ASP2166
|
4.6
|
0.0
|
1.0
|
CA
|
A:ASP2166
|
4.6
|
0.0
|
1.0
|
C
|
A:ASP2168
|
4.6
|
0.0
|
1.0
|
H
|
A:GLY2186
|
4.6
|
0.0
|
1.0
|
CA
|
A:ILE2185
|
4.7
|
0.0
|
1.0
|
C
|
A:ASN2183
|
4.7
|
0.0
|
1.0
|
HD1
|
A:PHE2188
|
4.7
|
0.0
|
1.0
|
HA2
|
A:GLY2187
|
4.7
|
0.0
|
1.0
|
HG3
|
A:GLU2169
|
4.7
|
0.0
|
1.0
|
N
|
A:PHE2188
|
4.7
|
0.0
|
1.0
|
CA
|
A:PHE2188
|
4.8
|
0.0
|
1.0
|
CA
|
A:ASN2183
|
4.8
|
0.0
|
1.0
|
HA
|
A:ASP2166
|
4.8
|
0.0
|
1.0
|
CB
|
A:ASN2183
|
4.9
|
0.0
|
1.0
|
HB3
|
A:GLU2169
|
4.9
|
0.0
|
1.0
|
N
|
A:GLY2186
|
4.9
|
0.0
|
1.0
|
C
|
A:ILE2185
|
5.0
|
0.0
|
1.0
|
|
Reference:
A.K.Downing,
V.Knott,
J.M.Werner,
C.M.Cardy,
I.D.Campbell,
P.A.Handford.
Solution Structure of A Pair of Calcium-Binding Epidermal Growth Factor-Like Domains: Implications For the Marfan Syndrome and Other Genetic Disorders. Cell(Cambridge,Mass.) V. 85 597 1996.
ISSN: ISSN 0092-8674
PubMed: 8653794
DOI: 10.1016/S0092-8674(00)81259-3
Page generated: Thu Jul 11 07:53:54 2024
|