Calcium in PDB 1f55: Solution Structure of the Calcium Bound N-Terminal Domain of Yeast Calmodulin

The binding sites of Calcium atom in the Solution Structure of the Calcium Bound N-Terminal Domain of Yeast Calmodulin (pdb code 1f55). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of the Calcium Bound N-Terminal Domain of Yeast Calmodulin, PDB code: 1f55:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of the Calcium Bound N-Terminal Domain of Yeast Calmodulin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of the Calcium Bound N-Terminal Domain of Yeast Calmodulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca101 b:0.0 occ:1.00 HB2 A:ASP22 2.2 0.0 1.0 HB2 A:ASN24 2.7 0.0 1.0 OD1 A:ASP20 2.8 0.0 1.0 OE1 A:GLU31 2.8 0.0 1.0 OE2 A:GLU31 2.8 0.0 1.0 OD2 A:ASP22 2.8 0.0 1.0 O A:SER26 2.8 0.0 1.0 OD1 A:ASN24 2.8 0.0 1.0 CD A:GLU31 3.1 0.0 1.0 CB A:ASP22 3.2 0.0 1.0 H A:ASN24 3.2 0.0 1.0 OD2 A:ASP20 3.2 0.0 1.0 CG A:ASP20 3.3 0.0 1.0 CG A:ASN24 3.3 0.0 1.0 CG A:ASP22 3.4 0.0 1.0 CB A:ASN24 3.5 0.0 1.0 HB3 A:ASP22 3.8 0.0 1.0 C A:SER26 3.8 0.0 1.0 H A:ASP22 3.8 0.0 1.0 H A:SER26 3.9 0.0 1.0 HA A:ILE27 3.9 0.0 1.0 OG A:SER26 4.0 0.0 1.0 N A:ASN24 4.0 0.0 1.0 HB3 A:SER26 4.2 0.0 1.0 CA A:ASP22 4.2 0.0 1.0 HB3 A:ASN24 4.3 0.0 1.0 N A:ASP22 4.3 0.0 1.0 H A:ASN23 4.3 0.0 1.0 ND2 A:ASN24 4.3 0.0 1.0 CA A:ASN24 4.4 0.0 1.0 HG A:SER28 4.4 0.0 1.0 CB A:SER26 4.4 0.0 1.0 CA A:SER26 4.5 0.0 1.0 N A:SER26 4.5 0.0 1.0 C A:ASP22 4.6 0.0 1.0 CB A:ASP20 4.6 0.0 1.0 N A:ASN23 4.6 0.0 1.0 N A:ILE27 4.6 0.0 1.0 CG A:GLU31 4.6 0.0 1.0 H A:SER28 4.6 0.0 1.0 HA A:ASP20 4.6 0.0 1.0 OD1 A:ASP22 4.6 0.0 1.0 CA A:ILE27 4.7 0.0 1.0 HD22 A:ASN24 4.7 0.0 1.0 HB2 A:ASP20 4.7 0.0 1.0 OG A:SER28 4.7 0.0 1.0 H A:LYS21 4.8 0.0 1.0 C A:ASN24 4.9 0.0 1.0 HG A:SER26 4.9 0.0 1.0 HG3 A:GLU31 4.9 0.0 1.0 HG2 A:GLU31 5.0 0.0 1.0 HD21 A:ASN24 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Solution Structure of the Calcium Bound N-Terminal Domain of Yeast Calmodulin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of the Calcium Bound N-Terminal Domain of Yeast Calmodulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca102 b:0.0 occ:1.00 HA A:ILE63 2.3 0.0 1.0 HD22 A:ASN60 2.4 0.0 1.0 O A:GLN62 2.5 0.0 1.0 OD1 A:ASP58 2.5 0.0 1.0 OE2 A:GLU67 2.7 0.0 1.0 OE1 A:GLU67 2.8 0.0 1.0 OD1 A:ASN60 2.8 0.0 1.0 OD1 A:ASP56 2.8 0.0 1.0 CD A:GLU67 3.0 0.0 1.0 ND2 A:ASN60 3.1 0.0 1.0 CG A:ASP58 3.1 0.0 1.0 OD2 A:ASP58 3.1 0.0 1.0 CA A:ILE63 3.2 0.0 1.0 CG A:ASN60 3.3 0.0 1.0 HG3 A:GLU64 3.3 0.0 1.0 C A:GLN62 3.4 0.0 1.0 H A:GLU64 3.4 0.0 1.0 HA A:ASP56 3.6 0.0 1.0 HG3 A:GLN62 3.7 0.0 1.0 N A:ILE63 3.7 0.0 1.0 HG22 A:VAL57 3.8 0.0 1.0 H A:ASP58 3.8 0.0 1.0 HD21 A:ASN60 3.9 0.0 1.0 N A:GLU64 3.9 0.0 1.0 CG A:ASP56 3.9 0.0 1.0 C A:ILE63 3.9 0.0 1.0 HG21 A:ILE63 3.9 0.0 1.0 OE2 A:GLU64 4.0 0.0 1.0 H A:ASN60 4.1 0.0 1.0 H A:GLY59 4.2 0.0 1.0 CG A:GLU64 4.2 0.0 1.0 CD A:GLU64 4.2 0.0 1.0 CB A:ILE63 4.4 0.0 1.0 H A:VAL57 4.4 0.0 1.0 HB A:ILE63 4.4 0.0 1.0 H A:GLN62 4.4 0.0 1.0 CB A:ASP58 4.5 0.0 1.0 CG A:GLU67 4.5 0.0 1.0 CA A:ASP56 4.5 0.0 1.0 OD2 A:ASP56 4.6 0.0 1.0 HB3 A:ASP58 4.6 0.0 1.0 CG2 A:ILE63 4.7 0.0 1.0 H A:ILE63 4.7 0.0 1.0 CG A:GLN62 4.7 0.0 1.0 CA A:GLN62 4.7 0.0 1.0 N A:ASP58 4.7 0.0 1.0 CG2 A:VAL57 4.7 0.0 1.0 CB A:ASN60 4.7 0.0 1.0 HG3 A:GLU67 4.7 0.0 1.0 N A:VAL57 4.8 0.0 1.0 HG23 A:VAL57 4.9 0.0 1.0 HB3 A:ASN60 4.9 0.0 1.0 N A:ASN60 4.9 0.0 1.0 CB A:ASP56 4.9 0.0 1.0 O A:ILE63 4.9 0.0 1.0 OE1 A:GLU64 4.9 0.0 1.0 HB2 A:GLU64 4.9 0.0 1.0 HG21 A:VAL57 5.0 0.0 1.0 N A:GLY59 5.0 0.0 1.0 HG2 A:GLU64 5.0 0.0 1.0 N A:GLN62 5.0 0.0 1.0 HG2 A:GLN62 5.0 0.0 1.0 C A:ASP56 5.0 0.0 1.0 HB3 A:GLU67 5.0 0.0 1.0

H.Ishida, K.Takahashi, K.Nakashima, Y.Kumaki, M.Nakata, K.Hikichi, M.Yazawa. Solution Structures of the N-Terminal Domain of Yeast Calmodulin: CA2+-Dependent Conformational Change and Its Functional Implication Biochemistry V. 39 13660 2000.
ISSN: ISSN 0006-2960
PubMed: 11076504
DOI: 10.1021/BI000582X