Calcium in PDB 1f5y: uc(Nmr) Structure of A Concatemer of the First and Second Ligand-Binding Modules of the Human Ldl Receptor

The binding sites of Calcium atom in the uc(Nmr) Structure of A Concatemer of the First and Second Ligand-Binding Modules of the Human Ldl Receptor (pdb code 1f5y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the uc(Nmr) Structure of A Concatemer of the First and Second Ligand-Binding Modules of the Human Ldl Receptor, PDB code: 1f5y:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the uc(Nmr) Structure of A Concatemer of the First and Second Ligand-Binding Modules of the Human Ldl Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of uc(Nmr) Structure of A Concatemer of the First and Second Ligand-Binding Modules of the Human Ldl Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca86 b:0.0 occ:1.00 H A:CYS27 2.5 0.0 1.0 H A:ASP28 2.5 0.0 1.0 HA A:VAL26 2.5 0.0 1.0 O A:SER30 2.6 0.0 1.0 OD1 A:ASP28 2.7 0.0 1.0 O A:TRP25 2.7 0.0 1.0 OE1 A:GLU32 2.7 0.0 1.0 OD1 A:ASP38 2.7 0.0 1.0 OE1 A:GLU39 2.7 0.0 1.0 N A:CYS27 2.9 0.0 1.0 HB2 A:GLU39 2.9 0.0 1.0 O A:ASP38 3.1 0.0 1.0 HB2 A:ASP38 3.2 0.0 1.0 CA A:VAL26 3.3 0.0 1.0 C A:VAL26 3.3 0.0 1.0 N A:ASP28 3.4 0.0 1.0 HA A:GLU39 3.5 0.0 1.0 C A:ASP38 3.5 0.0 1.0 CG A:ASP28 3.6 0.0 1.0 CG A:ASP38 3.6 0.0 1.0 C A:TRP25 3.6 0.0 1.0 HA A:CYS27 3.7 0.0 1.0 CD A:GLU39 3.7 0.0 1.0 H A:GLY29 3.7 0.0 1.0 CD A:GLU32 3.8 0.0 1.0 CB A:GLU39 3.8 0.0 1.0 CA A:CYS27 3.8 0.0 1.0 C A:SER30 3.8 0.0 1.0 HA A:ALA31 3.9 0.0 1.0 CB A:ASP38 3.9 0.0 1.0 H A:GLU32 3.9 0.0 1.0 H A:SER30 3.9 0.0 1.0 N A:GLU39 3.9 0.0 1.0 N A:VAL26 4.0 0.0 1.0 CA A:GLU39 4.0 0.0 1.0 C A:CYS27 4.1 0.0 1.0 OE2 A:GLU32 4.2 0.0 1.0 CG A:GLU39 4.3 0.0 1.0 O A:VAL26 4.3 0.0 1.0 OD2 A:ASP28 4.3 0.0 1.0 CA A:ASP38 4.4 0.0 1.0 CB A:ASP28 4.4 0.0 1.0 HB3 A:ASP28 4.4 0.0 1.0 N A:SER30 4.5 0.0 1.0 CA A:ASP28 4.5 0.0 1.0 HB A:VAL26 4.5 0.0 1.0 N A:GLY29 4.5 0.0 1.0 HG2 A:GLU39 4.5 0.0 1.0 CB A:VAL26 4.6 0.0 1.0 OE2 A:GLU39 4.6 0.0 1.0 H A:GLU39 4.6 0.0 1.0 HB3 A:GLU39 4.6 0.0 1.0 CA A:ALA31 4.7 0.0 1.0 N A:ALA31 4.7 0.0 1.0 OD2 A:ASP38 4.8 0.0 1.0 N A:GLU32 4.8 0.0 1.0 CA A:SER30 4.8 0.0 1.0 HB3 A:ASP38 4.8 0.0 1.0 HG12 A:VAL26 4.8 0.0 1.0 HB2 A:GLU32 4.9 0.0 1.0 H A:VAL26 4.9 0.0 1.0 HB3 A:TRP25 5.0 0.0 1.0 CA A:TRP25 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the uc(Nmr) Structure of A Concatemer of the First and Second Ligand-Binding Modules of the Human Ldl Receptor


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of uc(Nmr) Structure of A Concatemer of the First and Second Ligand-Binding Modules of the Human Ldl Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca87 b:0.0 occ:1.00 HB3 A:ASP71 2.4 0.0 1.0 HB3 A:TRP68 2.5 0.0 1.0 O A:GLN73 2.7 0.0 1.0 O A:TRP68 2.7 0.0 1.0 OE1 A:GLU82 2.7 0.0 1.0 OD2 A:ASP75 2.7 0.0 1.0 OD2 A:ASP71 2.7 0.0 1.0 OD2 A:ASP81 2.7 0.0 1.0 CB A:ASP71 3.3 0.0 1.0 HB3 A:GLN73 3.3 0.0 1.0 CG A:ASP71 3.5 0.0 1.0 CB A:TRP68 3.5 0.0 1.0 HE3 A:TRP68 3.5 0.0 1.0 HB2 A:ASP81 3.6 0.0 1.0 C A:TRP68 3.6 0.0 1.0 C A:GLN73 3.7 0.0 1.0 HB2 A:ASP71 3.7 0.0 1.0 CG A:ASP81 3.8 0.0 1.0 O A:ASP81 3.8 0.0 1.0 CG A:ASP75 3.9 0.0 1.0 CD A:GLU82 3.9 0.0 1.0 CA A:TRP68 4.0 0.0 1.0 H A:GLN73 4.0 0.0 1.0 HA A:TRP68 4.0 0.0 1.0 HB3 A:GLU82 4.0 0.0 1.0 H A:ASP71 4.1 0.0 1.0 HB2 A:TRP68 4.1 0.0 1.0 CB A:GLN73 4.2 0.0 1.0 CB A:ASP81 4.2 0.0 1.0 CE3 A:TRP68 4.2 0.0 1.0 CA A:GLN73 4.3 0.0 1.0 N A:GLN73 4.3 0.0 1.0 HG22 A:ILE64 4.3 0.0 1.0 CG A:TRP68 4.3 0.0 1.0 CA A:ASP71 4.4 0.0 1.0 C A:ASP81 4.5 0.0 1.0 HG2 A:GLN73 4.5 0.0 1.0 HB2 A:ASP75 4.5 0.0 1.0 CD2 A:TRP68 4.5 0.0 1.0 HA A:VAL74 4.6 0.0 1.0 OE2 A:GLU82 4.6 0.0 1.0 OD1 A:ASP75 4.6 0.0 1.0 N A:ASP71 4.7 0.0 1.0 C A:ASP71 4.7 0.0 1.0 OD1 A:ASP71 4.7 0.0 1.0 OD1 A:ASP81 4.8 0.0 1.0 H A:ASP75 4.8 0.0 1.0 N A:VAL74 4.8 0.0 1.0 CB A:ASP75 4.8 0.0 1.0 CG A:GLU82 4.8 0.0 1.0 CB A:GLU82 4.8 0.0 1.0 HA A:ARG69 4.8 0.0 1.0 N A:ARG69 4.9 0.0 1.0 H A:GLY72 4.9 0.0 1.0 HG23 A:ILE64 4.9 0.0 1.0 N A:GLY72 4.9 0.0 1.0 HG3 A:GLU82 4.9 0.0 1.0 CG A:GLN73 4.9 0.0 1.0 CG2 A:ILE64 5.0 0.0 1.0 HG21 A:ILE64 5.0 0.0 1.0 HB2 A:GLN73 5.0 0.0 1.0

N.D.Kurniawan, A.R.Atkins, S.Bieri, C.J.Brown, I.M.Brereton, P.A.Kroon, R.Smith. uc(Nmr) Structure of A Concatemer of the First and Second Ligand-Binding Modules of the Human Low-Density Lipoprotein Receptor. Protein Sci. V. 9 1282 2000.
ISSN: ISSN 0961-8368
PubMed: 10933493