Calcium in PDB 1f8v: The Structure of Pariacoto Virus Reveals A Dodecahedral Cage of Duplex Rna

The structure of The Structure of Pariacoto Virus Reveals A Dodecahedral Cage of Duplex Rna, PDB code: 1f8v was solved by L.Tang, K.N.Johnson, L.A.Ball, T.Lin, M.Yeager, J.E.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.00
Space group	P 1 21 1 3
Cell size a, b, c (Å), α, β, γ (°)	329.332, 346.944, 424.893, 90.00, 90.83, 90.00
R / Rfree (%)	21.9 / 22.1

The binding sites of Calcium atom in the The Structure of Pariacoto Virus Reveals A Dodecahedral Cage of Duplex Rna (pdb code 1f8v). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Structure of Pariacoto Virus Reveals A Dodecahedral Cage of Duplex Rna, PDB code: 1f8v:

Calcium binding site 1 out of 1 in the The Structure of Pariacoto Virus Reveals A Dodecahedral Cage of Duplex Rna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of Pariacoto Virus Reveals A Dodecahedral Cage of Duplex Rna within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:39.0 occ:1.00 OD2 C:ASP249 2.5 40.1 1.0 OD1 A:ASP249 2.6 40.1 1.0 CG C:ASP249 3.3 36.4 1.0 OD2 B:ASP249 3.3 41.2 1.0 OE2 A:GLU251 3.4 48.5 1.0 CG A:ASP249 3.4 37.8 1.0 OD1 C:ASP249 3.5 37.9 1.0 OD2 A:ASP249 3.6 39.2 1.0 OD1 B:ASP249 3.6 46.5 1.0 OE2 C:GLU251 3.7 48.9 1.0 CG B:ASP249 3.8 43.3 1.0 OE2 B:GLU251 4.0 43.1 1.0 CG C:GLU251 4.1 39.5 1.0 O3 C:SO4500 4.1 0.4 0.2 CD B:GLU251 4.3 42.2 1.0 CD C:GLU251 4.4 45.6 1.0 O2 C:SO4500 4.5 0.6 0.2 CG B:GLU251 4.5 36.6 1.0 CD A:GLU251 4.6 46.0 1.0 CB C:ASP249 4.7 32.2 1.0 OG1 B:THR248 4.7 37.7 1.0 CB B:THR248 4.7 37.4 1.0 CB A:ASP249 4.8 33.2 1.0 S C:SO4500 4.8 0.5 0.2 O4 C:SO4500 4.9 0.5 0.2

L.Tang, K.N.Johnson, L.A.Ball, T.Lin, M.Yeager, J.E.Johnson. The Structure of Pariacoto Virus Reveals A Dodecahedral Cage of Duplex Rna. Nat.Struct.Biol. V. 8 77 2001.
ISSN: ISSN 1072-8368
PubMed: 11135676
DOI: 10.1038/83089